MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-504

Family name MIR-504 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-504
Paralogues
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 928066351: 500-558 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 928066351: 500-558 [+] UCSC Ensembl
Mir-504-v2 928066351: 501-557 [+] UCSC Ensembl
Variant

Rno-Mir-504-v1
Seed GACCCUG
Precursor
(pre-Mir +30nt flank)		 
GAAUGGAAUGUUGGAACUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUGUCUGGAAACUUACAGAAGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGCACAGGCAACCACCGCAUGG
Get precursor sequence
Structure
        10         20         30        40        50         
GAAUGGAAUGUUGGAAC-    G    -            G     A    G-|  GGAA 
                  UGCU CUGU UGGGAGACCCUG UCUGC CUCU  UCU    A
                  ACGG GACA ACCCUUUGGGAC GGACG GAGG  AGA    C
GGUACGCCACCAACGGAC    A    U            G     A    GA^  CAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentNot in the assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-504-v1_5p
mirBase accessionMIMAT0012830
Sequence 
0- AGACCCUGGUCUGCACUCUGUCU -23
Get sequence
Proposed targets microrna.org: MIMAT0012830
TargetScanVert: rno-miR-504
miRDB: MIMAT0012830
Star sequence

Rno-Mir-504-v1_3p*
mirBase accessionNone
Sequence 
36- AGGGAGAGCAGGGCAGGGUUUCC -59
Get sequence
Variant

Rno-Mir-504-v2
Seed ACCCUGG
Precursor
(pre-Mir +30nt flank)		 
AAUGGAAUGUUGGAACUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUGUCUGGAAACUUACAGAAGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGCACAGGCAACCACCGCAUG
Get precursor sequence
Structure
        10         20         30        40         50       
AAUGGAAUGUUGGAACU-   G    -            G     A    G-|  GGAA 
                  GCU CUGU UGGGAGACCCUG UCUGC CUCU  UCU    A
                  CGG GACA ACCCUUUGGGAC GGACG GAGG  AGA    C
GUACGCCACCAACGGACA   A    U            G     A    GA^  CAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentNot in the assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-504-v2_5p
mirBase accessionMIMAT0012830
Sequence 
0- GACCCUGGUCUGCACUCUGUCU -22
Get sequence
Proposed targets microrna.org: MIMAT0012830
TargetScanVert: rno-miR-504
miRDB: MIMAT0012830
Star sequence

Rno-Mir-504-v2_3p*
mirBase accessionNone
Sequence 
35- AGGGAGAGCAGGGCAGGGUUUC -57
Get sequence