MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-504

Family name MIR-504 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-504
Paralogues
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)		 chrX: 59097668-59097726 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 chrX: 59097668-59097726 [-] UCSC Ensembl
Mir-504-v2 chrX: 59097669-59097725 [-] UCSC Ensembl
Variant

Mmu-Mir-504-v1
Seed GACCCUG
Precursor
(pre-Mir +30nt flank)		 
GAAUGGAAUGUUGAAACUGCUCCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAAACUUACUGAAGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACUAAUGGGAA
Get precursor sequence
Structure
        10        20          30        40        50         
GAAUGGAAUGUUGAAACU    -    -            G     A    A-| UGUAA 
                  GCUC CUGU UGGGAGACCCUG UCUGC CUCU  UC     A
                  CGGG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
AAGGGUAAUCAUCGGACA    A    U            G     A    GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-504-v1_5p
mirBase accessionMIMAT0004889
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
Get sequence
Proposed targets microrna.org: MIMAT0004889
miRDB: MIMAT0004889
Star sequence

Mmu-Mir-504-v1_3p*
mirBase accessionMIMAT0017277
Sequence 
37- GGGAGAGCAGGGCAGGGUUUCC -59
Get sequence
Proposed targets TargetScanVert: mmu-miR-504-3p
miRDB: MIMAT0017277
Variant

Mmu-Mir-504-v2
Seed ACCCUGG
Precursor
(pre-Mir +30nt flank)		 
AAUGGAAUGUUGAAACUGCUCCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAAACUUACUGAAGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACUAAUGGGA
Get precursor sequence
Structure
        10        20          30        40         50       
AAUGGAAUGUUGAAACUG   -    -            G     A    A-| UGUAA 
                  CUC CUGU UGGGAGACCCUG UCUGC CUCU  UC     A
                  GGG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
AGGGUAAUCAUCGGACAC   A    U            G     A    GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-504-v2_5p
mirBase accessionMIMAT0004889
Sequence 
0- GACCCUGGUCUGCACUCUAUC -21
Get sequence
Proposed targets microrna.org: MIMAT0004889
miRDB: MIMAT0004889
Star sequence

Mmu-Mir-504-v2_3p*
mirBase accessionMIMAT0017277
Sequence 
36- GGGAGAGCAGGGCAGGGUUUC -57
Get sequence
Proposed targets TargetScanVert: mmu-miR-504-3p
miRDB: MIMAT0017277