MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-504

Family name MIR-504 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-504
Paralogues
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 114357348-114357406 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 CM009179.1: 114357348-114357406 [-] UCSC Ensembl
Mir-504-v2 CM009179.1: 114357349-114357405 [-] UCSC Ensembl
Variant

Eca-Mir-504-v1
Seed GACCCUG
Precursor
(pre-Mir +30nt flank)		 
AAGUGCAAUGUUGAAUCGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCAUU
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Structure
        10        20          30        40        50         
AAGUGCAAUGUUGAAUCG   G-    -            G     A    A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                  CGG  GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UUACGCCACCAUCGGACA   GA    U            G     C    GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-504-v1_5p
mirBase accessionMIMAT0013228
Sequence 
0- AGACCCUGGUCUGCACUCUAUCU -23
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Star sequence

Eca-Mir-504-v1_3p* (predicted)
mirBase accessionNone
Sequence 
36- AGGGAGCGCAGGGCAGGGUUUCC -59
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Variant

Eca-Mir-504-v2
Seed ACCCUGG
Precursor
(pre-Mir +30nt flank)		 
AGUGCAAUGUUGAAUCGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCAU
Get precursor sequence
Structure
        10         20         30        40         50       
AGUGCAAUGUUGAAUCGG-  G    -            G     A    A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UACGCCACCAUCGGACACG  A    U            G     C    GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-504-v2_5p
mirBase accessionMIMAT0013228
Sequence 
0- GACCCUGGUCUGCACUCUAUCU -22
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Star sequence

Eca-Mir-504-v2_3p* (predicted)
mirBase accessionNone
Sequence 
35- AGGGAGCGCAGGGCAGGGUUUC -57
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