MirGeneDB ID | Laf-Mir-504 |
Family name |
MIR-504 (all species) |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-504-v1
Cfa-Mir-504-v1
Cja-Mir-504-v1
Cpo-Mir-504-v1
Dno-Mir-504-v1
Eca-Mir-504-v1
Ete-Mir-504-v1
Hsa-Mir-504-v1
Mml-Mir-504-v1
Mmr-Mir-504-v1
Mmu-Mir-504-v1
Ocu-Mir-504-v1
Pab-Mir-504-v1
Rno-Mir-504-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010116.1: 2513706-2513765 [+]
UCSC
Ensembl
|
Seed |
GACCCUG |
Precursor (pre-Mir +30nt flank) |
AUGUGAAGUGAUGAAUCUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUUAUCUGUAUGCUUACUGAGGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCUGUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGUGAAGUGAUGAAUCU G- -| G A UA UGUAU
GCU CUGU UGGGAGACCCUG UCUGC CUCU UC G
CGG GACA ACCCUUUGGGAC GGACG GAGG AG C
GGUGUCCACCAUCGGACA GA U^ G A GG UCAUU
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Laf-Mir-504_5p (predicted) |
mirBase accession | None |
Sequence |
0- AGACCCUGGUCUGCACUCUUAUC -23
Get sequence
|
Star sequence |
Laf-Mir-504_3p* (predicted) |
mirBase accession | None |
Sequence |
37- GGGGAGAGCAGGGCAGGGUUUCC -60
Get sequence
|