MirGeneDB ID | Ete-Mir-504-v1 |
Family name |
MIR-504 (all species) |
Seed |
GACCCUG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-504-v2
|
Orthologues |
Bta-Mir-504
Cfa-Mir-504-v1
Cpo-Mir-504-v1
Dno-Mir-504-v1
Hsa-Mir-504-v1
Mml-Mir-504-v1
Mmu-Mir-504-v1
Ocu-Mir-504-v1
Rno-Mir-504-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980367: 6316013-6316071 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAGUAAAAUGCUGACGCUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAGGGGAGAGCAGAGCAGGGUUUCCCAUACAGAGGGCACAGGCUGCUGCCCUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGUAAAAUGCUGACGCU G- - G A A-| UGUAU
GCU CUGU UGGGAGACCCUG UCUGC CUCU UC G
CGG GACA ACCCUUUGGGAC AGACG GAGG AG C
GUGUCCCGUCGUCGGACA GA U G A GG^ UCAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ete-Mir-504-v1_5p |
mirBase accession | None |
Sequence |
0- AGACCCUGGUCUGCACUCUAUC -22
Get sequence
|
Star sequence |
Ete-Mir-504-v1_3p* (predicted) |
mirBase accession | None |
Sequence |
37- GGGAGAGCAGAGCAGGGUUUCC -59
Get sequence
|