MirGeneDB 3.0
MirGeneDB ID

Hsa-Mir-504

Family name MIR-504 (all species)
Species Human (Homo sapiens)
MiRBase ID hsa-mir-504
Paralogues
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)		 chrX: 138667723-138667781 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 chrX: 138667723-138667781 [-] UCSC Ensembl
Mir-504-v2 chrX: 138667724-138667780 [-] UCSC Ensembl
Variant

Hsa-Mir-504-v1
Seed GACCCUG
Precursor
(pre-Mir +30nt flank)		 
GAGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAUG
Get precursor sequence
Structure
        10        20          30        40        50         
GAGUGGAAUGUUGAAUCA   G-    -            G          A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGCACUCU  UC     U
                  CGG  GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
GUAUGCCACCAUCAGACA   GA    U            G          GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-504-v1_5p
mirBase accessionMIMAT0002875
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
Get sequence
Proposed targets microrna.org: MIMAT0002875
miRDB: MIMAT0002875
Star sequence

Hsa-Mir-504-v1_3p*
mirBase accessionMIMAT0026612
Sequence 
37- GGGAGUGCAGGGCAGGGUUUCC -59
Get sequence
Proposed targets TargetScanVert: hsa-miR-504-3p
miRDB: MIMAT0026612
Variant

Hsa-Mir-504-v2
Seed ACCCUGG
Precursor
(pre-Mir +30nt flank)		 
AGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAU
Get precursor sequence
Structure
        10         20         30        40         50       
AGUGGAAUGUUGAAUCAG-  G    -            G          A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGCACUCU  UC     U
                   GG GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
UAUGCCACCAUCAGACACG  A    U            G          GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-504-v2_5p
mirBase accessionMIMAT0002875
Sequence 
0- GACCCUGGUCUGCACUCUAUC -21
Get sequence
Proposed targets microrna.org: MIMAT0002875
miRDB: MIMAT0002875
Star sequence

Hsa-Mir-504-v2_3p*
mirBase accessionMIMAT0026612
Sequence 
36- GGGAGUGCAGGGCAGGGUUUC -57
Get sequence
Proposed targets TargetScanVert: hsa-miR-504-3p
miRDB: MIMAT0026612