MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-203

Family name MIR-203 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-203a
Paralogues
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cja-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Eca-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr6: 136704974-136705033 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v1)		 Mir-203-v1 chr6: 136704974-136705033 [+] UCSC Ensembl
Mir-203-v2 chr6: 136704974-136705033 [+] UCSC Ensembl
Variant

Rno-Mir-203-v1
Seed UGAAAUG
Precursor
(pre-Mir +30nt flank)		 
AGAGCUUCUGUGUGCAGGCGCGCCUGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGCGCACGGCAGCGGCGACAGCAA
Get precursor sequence
Structure
        10          20        30        40        50          
AGAGCUUCUGUGUGCAG--|      U    C         U    G    A   UUCUGU 
                   GCGCGCC GGUC AGUGGUUCU AACA UUCA CAG      \
                   CGCGCGG CCAG UCACCAGGA UUGU AAGU GUU      A
AACGACAGCGGCGACGGCA^      C    A         U    A    -   AACGCG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-203-v1_5p*
mirBase accessionMIMAT0017153
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
Proposed targets TargetScanVert: rno-miR-203a-5p
miRDB: MIMAT0017153
Mature sequence

Rno-Mir-203-v1_3p
mirBase accessionMIMAT0000876
Sequence 
38- GUGAAAUGUUUAGGACCACUAG -60
Get sequence
Proposed targets microrna.org: MIMAT0000876
TargetScanVert: rno-miR-203a-3p
miRDB: MIMAT0000876
Variant

Rno-Mir-203-v2
Seed GAAAUGU
Precursor
(pre-Mir +30nt flank)		 
AGAGCUUCUGUGUGCAGGCGCGCCUGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGCGCACGGCAGCGGCGACAGCAA
Get precursor sequence
Structure
        10          20        30        40        50          
AGAGCUUCUGUGUGCAG--|      U    C         U    G    A  GUUCUGU 
                   GCGCGCC GGUC AGUGGUUCU AACA UUCA CA       \
                   CGCGCGG CCAG UCACCAGGA UUGU AAGU GU       A
AACGACAGCGGCGACGGCA^      C    A         U    A    -  UAACGCG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-203-v2_5p*
mirBase accessionMIMAT0017153
Sequence 
0- AGUGGUUCUUAACAGUUCAACA -22
Get sequence
Proposed targets TargetScanVert: rno-miR-203a-5p
miRDB: MIMAT0017153
Mature sequence

Rno-Mir-203-v2_3p
mirBase accessionMIMAT0000876
Sequence 
39- UGAAAUGUUUAGGACCACUAG -60
Get sequence
Proposed targets microrna.org: MIMAT0000876
TargetScanVert: rno-miR-203a-3p
miRDB: MIMAT0000876