MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-203

Family name MIR-203 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-203a
Paralogues
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cja-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Eca-Mir-203-v1  Ete-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 5: 50883065-50883124 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v1)		 Mir-203-v1 5: 50883065-50883124 [+] UCSC Ensembl
Mir-203-v2 5: 50883065-50883124 [+] UCSC Ensembl
Variant

Gga-Mir-203-v1
Seed UGAAAUG
Precursor
(pre-Mir +30nt flank)		 
CGCCCCGCGCCUCCUCAGCCUCCUUGGUGCAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCAUAAUUGUGAAAUGUUUAGGACCACUUGACCAGCGAGGCCCGGGCAUCGGGCGGCCGA
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Structure
        10          20        30        40        50          
CGCCCCGCGCCUCCUCA--|    C     GC         U    G    A   UUCUCU 
                   GCCUC UUGGU  AGUGGUUCU AACA UUCA CAG      \
                   CGGAG GACCA  UCACCAGGA UUGU AAGU GUU      A
AGCCGGCGGGCUACGGGCC^    C     GU         U    A    -   AAUACU 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-203-v1_5p*
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
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Mature sequence

Gga-Mir-203-v1_3p
mirBase accessionMIMAT0001146
Sequence 
38- GUGAAAUGUUUAGGACCACUUG -60
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Proposed targets TargetScanVert: gga-miR-203a
miRDB: MIMAT0001146
Variant

Gga-Mir-203-v2
Seed GAAAUGU
Precursor
(pre-Mir +30nt flank)		 
CGCCCCGCGCCUCCUCAGCCUCCUUGGUGCAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCAUAAUUGUGAAAUGUUUAGGACCACUUGACCAGCGAGGCCCGGGCAUCGGGCGGCCGA
Get precursor sequence
Structure
        10          20        30        40        50          
CGCCCCGCGCCUCCUCA--|    C     GC         U    G    A  GUUCUCU 
                   GCCUC UUGGU  AGUGGUUCU AACA UUCA CA       \
                   CGGAG GACCA  UCACCAGGA UUGU AAGU GU       A
AGCCGGCGGGCUACGGGCC^    C     GU         U    A    -  UAAUACU 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-203-v2_5p*
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACA -22
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Mature sequence

Gga-Mir-203-v2_3p
mirBase accessionMIMAT0001146
Sequence 
39- UGAAAUGUUUAGGACCACUUG -60
Get sequence
Proposed targets TargetScanVert: gga-miR-203a
miRDB: MIMAT0001146