MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-203

Family name MIR-203 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cja-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009171.1: 45947387-45947446 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v1)		 Mir-203-v1 CM009171.1: 45947387-45947446 [+] UCSC Ensembl
Mir-203-v2 CM009171.1: 45947387-45947446 [+] UCSC Ensembl
Variant

Eca-Mir-203-v1
Seed UGAAAUG
Precursor
(pre-Mir +30nt flank)		 
CGCGGCGGAGCGCGGACGCGCGCCGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCCUGGCUGCGGCGGCGACAG
Get precursor sequence
Structure
        10          20        30        40        50          
CGCGGCGGAGCGCGGAC--| G         C         U    G    A   UUCUGU 
                   GC CGCCGGGUC AGUGGUUCU AACA UUCA CAG      \
                   CG GCGGCCCAG UCACCAGGA UUGU AAGU GUU      A
GACAGCGGCGGCGUCGGUC^ G         A         U    A    -   AACGCG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-203-v1_5p*
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
Mature sequence

Eca-Mir-203-v1_3p
mirBase accessionNone
Sequence 
38- GUGAAAUGUUUAGGACCACUAG -60
Get sequence
Variant

Eca-Mir-203-v2
Seed GAAAUGU
Precursor
(pre-Mir +30nt flank)		 
CGCGGCGGAGCGCGGACGCGCGCCGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCCUGGCUGCGGCGGCGACAG
Get precursor sequence
Structure
        10          20        30        40        50          
CGCGGCGGAGCGCGGAC--| G         C         U    G    A  GUUCUGU 
                   GC CGCCGGGUC AGUGGUUCU AACA UUCA CA       \
                   CG GCGGCCCAG UCACCAGGA UUGU AAGU GU       A
GACAGCGGCGGCGUCGGUC^ G         A         U    A    -  UAACGCG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-203-v2_5p*
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACA -22
Get sequence
Mature sequence

Eca-Mir-203-v2_3p
mirBase accessionNone
Sequence 
39- UGAAAUGUUUAGGACCACUAG -60
Get sequence