Mir-137-P1-v2

MirGeneDB ID

Rno-Mir-137-P1

Family name

MIR-137 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-137

Paralogues

Rno-Mir-137-P1-v1

Orthologues

Aca-Mir-137-P1-v1 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P1-v1 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Bta-Mir-137-P1-v1 Cbr-Mir-137 Cel-Mir-137 Cfa-Mir-137-P1-v1 Cja-Mir-137-P1-v1 Cli-Mir-137-P1-v1 Cmi-Mir-137-P1 Cpi-Mir-137-P1-v1 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dno-Mir-137-P1-v1 Dpu-Mir-137 Dre-Mir-137-P1a-v1 Dre-Mir-137-P1b-v1 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Eca-Mir-137-P1 Esc-Mir-137 Ete-Mir-137-P1-v1 Gga-Mir-137-P1-v1 Gja-Mir-137-P1-v1 Gmo-Mir-137-P1b-v1 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Hsa-Mir-137-P1-v1 Isc-Mir-137 Laf-Mir-137-P1 Lan-Mir-137 Lch-Mir-137-P1 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Loc-Mir-137-P1-v1 Mal-Mir-137-P1b-v1 Mdo-Mir-137-P1-v1 Mgi-Mir-137 Mml-Mir-137-P1-v1 Mmr-Mir-137-P1 Mmu-Mir-137-P1-v1 Mom-Mir-137 Mun-Mir-137-P1 Neu-Mir-137-P1 Oan-Mir-137-P1-v1 Obi-Mir-137 Ocu-Mir-137-P1-v1 Ofu-Mir-137 Pab-Mir-137-P1-v1 Pau-Mir-137 Pbv-Mir-137-P1-v1 Pca-Mir-137 Pdu-Mir-137 Pma-Mir-137-o1 Pve-Mir-137 Rph-Mir-137 Sha-Mir-137-P1-v1 Sko-Mir-137 Snu-Mir-137 Spt-Mir-137-P1 Spu-Mir-137 Sto-Mir-137-P1 Tgu-Mir-137-P1-v1 Tur-Mir-137 War-Mir-137 Xbo-Mir-137 Xla-Mir-137-P1 Xtr-Mir-137-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 221658127-221658187 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-137-P1-v2)

Mir-137-P1-v2 chr2: 221658127-221658187 [+] UCSC Ensembl
Mir-137-P1-v1 chr2: 221658128-221658186 [+] UCSC Ensembl

Variant

Rno-Mir-137-P1-v2

Seed

AUUGCUU

Precursor
(pre-Mir +30nt flank)

CGGCAGCUUGGCCCUCUGACUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGGAGAGUACCAGCGGCAGGCGGGCAGC

Get precursor sequence

Structure

        10          20        30        40        50        60
CGGCAGCUUGGCCCUCUG--|          UG   G           UG A    ACGGA 
                    ACUCUCUUCGG  ACG GUAUUCUUGGG  G UAAU     U
                    UGAGAGGAGCU  UGC CAUAAGAAUUC  U AUUG     U
CGACGGGCGGACGGCGACCA^          GA   G           GU -    UUGCA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-137-P1-v2_5p* (predicted)

mirBase accession

MIMAT0017126

Sequence

0- GACGGGUAUUCUUGGGUGGAUAAU -24

Get sequence

Proposed targets

TargetScanVert: rno-miR-137-5p
miRDB: MIMAT0017126

Mature sequence

Rno-Mir-137-P1-v2_3p

mirBase accession

MIMAT0000843

Sequence

38- UAUUGCUUAAGAAUACGCGUAGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000843
TargetScanVert: rno-miR-137-3p
miRDB: MIMAT0000843

Variant

Rno-Mir-137-P1-v1

Seed

UAUUGCU

Precursor
(pre-Mir +30nt flank)

GGCAGCUUGGCCCUCUGACUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGGAGAGUACCAGCGGCAGGCGGGCAG

Get precursor sequence

Structure

        10          20        30        40        50         
GGCAGCUUGGCCCUCUG--|          UG   G           UG A     CGGA 
                   ACUCUCUUCGG  ACG GUAUUCUUGGG  G UAAUA    U
                   UGAGAGGAGCU  UGC CAUAAGAAUUC  U AUUGU    U
GACGGGCGGACGGCGACCA^          GA   G           GU -     UGCA 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-137-P1-v1_5p*

mirBase accession

MIMAT0017126

Sequence

0- ACGGGUAUUCUUGGGUGGAUAAUA -24

Get sequence

Proposed targets

TargetScanVert: rno-miR-137-5p
miRDB: MIMAT0017126

Mature sequence

Rno-Mir-137-P1-v1_3p

mirBase accession

MIMAT0000843

Sequence

36- UUAUUGCUUAAGAAUACGCGUAG -59

Get sequence

Proposed targets

microrna.org: MIMAT0000843
TargetScanVert: rno-miR-137-3p
miRDB: MIMAT0000843