Mir-137-P1-v1

MirGeneDB ID

Gja-Mir-137-P1

Family name

MIR-137 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-137-P3

Orthologues

Aca-Mir-137-P1-v1 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P1-v1 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Bta-Mir-137-P1-v1 Cbr-Mir-137 Cel-Mir-137 Cfa-Mir-137-P1-v1 Cja-Mir-137-P1-v1 Cli-Mir-137-P1-v1 Cmi-Mir-137-P1 Cpi-Mir-137-P1-v1 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dno-Mir-137-P1-v1 Dpu-Mir-137 Dre-Mir-137-P1a-v1 Dre-Mir-137-P1b-v1 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Eca-Mir-137-P1 Esc-Mir-137 Ete-Mir-137-P1-v1 Gga-Mir-137-P1-v1 Gmo-Mir-137-P1b-v1 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Hsa-Mir-137-P1-v1 Isc-Mir-137 Laf-Mir-137-P1 Lan-Mir-137 Lch-Mir-137-P1 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Loc-Mir-137-P1-v1 Mal-Mir-137-P1b-v1 Mdo-Mir-137-P1-v1 Mgi-Mir-137 Mml-Mir-137-P1-v1 Mmr-Mir-137-P1 Mmu-Mir-137-P1-v1 Mom-Mir-137 Mun-Mir-137-P1 Neu-Mir-137-P1 Oan-Mir-137-P1-v1 Obi-Mir-137 Ocu-Mir-137-P1-v1 Ofu-Mir-137 Pab-Mir-137-P1-v1 Pau-Mir-137 Pbv-Mir-137-P1-v1 Pca-Mir-137 Pdu-Mir-137 Pma-Mir-137-o1 Pve-Mir-137 Rno-Mir-137-P1-v1 Rph-Mir-137 Sha-Mir-137-P1-v1 Sko-Mir-137 Snu-Mir-137 Spt-Mir-137-P1 Spu-Mir-137 Sto-Mir-137-P1 Tgu-Mir-137-P1-v1 Tur-Mir-137 War-Mir-137 Xbo-Mir-137 Xla-Mir-137-P1 Xtr-Mir-137-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015174277.1: 1631370-1631428 [-]

Clustered miRNAs
(< 50kb from Mir-137-P1-v1)

Mir-137-P1-v2 NW_015174277.1: 1631369-1631429 [-]
Mir-137-P1-v1 NW_015174277.1: 1631370-1631428 [-]

Variant

Gja-Mir-137-P1-v1

Seed

UAUUGCU

Precursor
(pre-Mir +30nt flank)

GCACCGGUUCUUCUCUGACUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGGAGAGUACUUGCGGCAGGCAGGCGG

Get precursor sequence

Structure

        10          20        30        40        50         
GCACCGGUUCUUCUCUG--|          UG   G           UG A     CGGA 
                   ACUCUCUUCGG  ACG GUAUUCUUGGG  G UAAUA    U
                   UGAGAGGAGCU  UGC CAUAAGAAUUC  U AUUGU    U
GGCGGACGGACGGCGUUCA^          GA   G           GU -     UGCA 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-137-P1-v1_5p* (predicted)

mirBase accession

None

Sequence

0- ACGGGUAUUCUUGGGUGGAUAAUA -24

Get sequence

Mature sequence

Gja-Mir-137-P1-v1_3p

mirBase accession

None

Sequence

36- UUAUUGCUUAAGAAUACGCGUAG -59

Get sequence

Variant

Gja-Mir-137-P1-v2

Seed

AUUGCUU

Precursor
(pre-Mir +30nt flank)

GGCACCGGUUCUUCUCUGACUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGGAGAGUACUUGCGGCAGGCAGGCGGG

Get precursor sequence

Structure

        10          20        30        40        50        60
GGCACCGGUUCUUCUCUG--|          UG   G           UG A    ACGGA 
                    ACUCUCUUCGG  ACG GUAUUCUUGGG  G UAAU     U
                    UGAGAGGAGCU  UGC CAUAAGAAUUC  U AUUG     U
GGGCGGACGGACGGCGUUCA^          GA   G           GU -    UUGCA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-137-P1-v2_5p* (predicted)

mirBase accession

None

Sequence

0- GACGGGUAUUCUUGGGUGGAUAAU -24

Get sequence

Mature sequence

Gja-Mir-137-P1-v2_3p

mirBase accession

None

Sequence

38- UAUUGCUUAAGAAUACGCGUAGU -61

Get sequence