MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-137-P1a

Family name MIR-137 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-137-2
Paralogues Dre-Mir-137-P1b-v1 
Orthologues Aca-Mir-137-P1-v1  Aga-Mir-137  Agr-Mir-137  Ami-Mir-137-P1-v1  Asu-Mir-137  Ava-Mir-137  Bfl-Mir-137  Bko-Mir-137  Bpl-Mir-137  Bta-Mir-137-P1-v1  Cbr-Mir-137  Cel-Mir-137  Cfa-Mir-137-P1-v1  Cja-Mir-137-P1-v1  Cli-Mir-137-P1-v1  Cmi-Mir-137-P1  Cpi-Mir-137-P1-v1  Cte-Mir-137  Dan-Mir-137  Dgr-Mir-137  Dma-Mir-137  Dme-Mir-137  Dmo-Mir-137  Dno-Mir-137-P1-v1  Dpu-Mir-137  Dsi-Mir-137  Dya-Mir-137  Eba-Mir-137  Ebu-Mir-137  Eca-Mir-137-P1  Esc-Mir-137  Ete-Mir-137-P1-v1  Gga-Mir-137-P1-v1  Gja-Mir-137-P1-v1  Gpa-Mir-137  Hme-Mir-137  Hru-Mir-137  Hsa-Mir-137-P1-v1  Isc-Mir-137  Laf-Mir-137-P1  Lan-Mir-137  Lch-Mir-137-P1  Lgi-Mir-137  Lhy-Mir-137  Llo-Mir-137  Loc-Mir-137-P1-v1  Mdo-Mir-137-P1-v1  Mgi-Mir-137  Mml-Mir-137-P1-v1  Mmr-Mir-137-P1  Mmu-Mir-137-P1-v1  Mom-Mir-137  Mun-Mir-137-P1  Neu-Mir-137-P1  Oan-Mir-137-P1-v1  Obi-Mir-137  Ocu-Mir-137-P1-v1  Ofu-Mir-137  Pab-Mir-137-P1-v1  Pau-Mir-137  Pbv-Mir-137-P1-v1  Pca-Mir-137  Pdu-Mir-137  Pma-Mir-137-o1  Pve-Mir-137  Rno-Mir-137-P1-v1  Rph-Mir-137  Sha-Mir-137-P1-v1  Sko-Mir-137  Snu-Mir-137  Spt-Mir-137-P1  Spu-Mir-137  Sto-Mir-137-P1  Tgu-Mir-137-P1-v1  Tur-Mir-137  War-Mir-137  Xbo-Mir-137  Xla-Mir-137-P1  Xtr-Mir-137-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr2: 20145753-20145811 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-137-P1a-v1)		 Mir-137-P1a-v2 chr2: 20145752-20145812 [-] UCSC Ensembl
Mir-137-P1b-v2 chr2: 20145752-20145812 [-] UCSC Ensembl
Mir-137-P1a-v1 chr2: 20145753-20145811 [-] UCSC Ensembl
Mir-137-P1b-v1 chr2: 20145753-20145811 [-] UCSC Ensembl
Variant

Dre-Mir-137-P1a-v1
Seed UAUUGCU
Precursor
(pre-Mir +30nt flank)		 
CCCCUUUUUUUUCUGAGGCUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGCUCUCGUUGUUAUUGCUUAAGAAUACGCGUAGUUGAGGAGAGUCAUUGUCGACUGUCUUCGG
Get precursor sequence
Structure
        10          20        30        40        50         
CCCCUUUUUUUUCUGAG--|          UG   G           UG A     CGGC 
                   GCUCUCUUCGG  ACG GUAUUCUUGGG  G UAAUA    U
                   UGAGAGGAGUU  UGC CAUAAGAAUUC  U AUUGU    C
GGCUUCUGUCAGCUGUUAC^          GA   G           GU -     UGCU 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-137-P1a-v1_5p*
mirBase accessionMIMAT0031972
Sequence 
0- ACGGGUAUUCUUGGGUGGAUAAUA -24
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Mature sequence

Dre-Mir-137-P1a-v1_3p
mirBase accessionMIMAT0001834
Sequence 
36- UUAUUGCUUAAGAAUACGCGUAG -59
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Proposed targets TargetScanFish: dre-miR-137
Variant

Dre-Mir-137-P1a-v2
Seed AUUGCUU
Precursor
(pre-Mir +30nt flank)		 
CCCCCUUUUUUUUCUGAGGCUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGCUCUCGUUGUUAUUGCUUAAGAAUACGCGUAGUUGAGGAGAGUCAUUGUCGACUGUCUUCGGG
Get precursor sequence
Structure
        10          20        30        40        50        60
CCCCCUUUUUUUUCUGA--|           UG   G           UG A    ACGGC 
                   GGCUCUCUUCGG  ACG GUAUUCUUGGG  G UAAU     U
                   CUGAGAGGAGUU  UGC CAUAAGAAUUC  U AUUG     C
GGGCUUCUGUCAGCUGUUA^           GA   G           GU -    UUGCU 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-137-P1a-v2_5p*
mirBase accessionMIMAT0031972
Sequence 
0- GACGGGUAUUCUUGGGUGGAUAAU -24
Get sequence
Mature sequence

Dre-Mir-137-P1a-v2_3p
mirBase accessionMIMAT0001834
Sequence 
38- UAUUGCUUAAGAAUACGCGUAGU -61
Get sequence
Proposed targets TargetScanFish: dre-miR-137