MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-137-P1b-v2

Family name MIR-137 (all species)
Seed AUUGCUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-137-1
Paralogues Dre-Mir-137-P1a-v1  Dre-Mir-137-P1a-v2  Dre-Mir-137-P1b-v1 
Orthologues Aca-Mir-137-P1-v1  Aca-Mir-137-P1-v2  Ami-Mir-137-P1-v1  Ami-Mir-137-P1-v2  Asu-Mir-137  Bfl-Mir-137  Bta-Mir-137-P1-v1  Bta-Mir-137-P1-v2  Cbr-Mir-137  Cel-Mir-137  Cfa-Mir-137-P1-v1  Cfa-Mir-137-P1-v2  Cgi-Mir-137  Cli-Mir-137-P1-v1  Cli-Mir-137-P1-v2  Cmi-Mir-137-P1  Cpi-Mir-137-P1-v1  Cpi-Mir-137-P1-v2  Cte-Mir-137  Dan-Mir-137  Dma-Mir-137  Dme-Mir-137  Dmo-Mir-137  Dno-Mir-137-P1-v1  Dno-Mir-137-P1-v2  Dpu-Mir-137  Dsi-Mir-137  Dya-Mir-137  Ebu-Mir-137  Esc-Mir-137  Ete-Mir-137-P1-v1  Ete-Mir-137-P1-v2  Gga-Mir-137-P1-v1  Gga-Mir-137-P1-v2  Gja-Mir-137-P1-v1  Gja-Mir-137-P1-v2  Gmo-Mir-137-P1b-v1  Gmo-Mir-137-P1b-v2  Hme-Mir-137  Hsa-Mir-137-P1-v1  Hsa-Mir-137-P1-v2  Isc-Mir-137  Lan-Mir-137  Lch-Mir-137-P1  Lgi-Mir-137  Loc-Mir-137-P1-v1  Loc-Mir-137-P1-v2  Mal-Mir-137-P1b-v1  Mal-Mir-137-P1b-v2  Mdo-Mir-137-P1-v1  Mdo-Mir-137-P1-v2  Mml-Mir-137-P1-v1  Mml-Mir-137-P1-v2  Mmu-Mir-137-P1-v1  Mmu-Mir-137-P1-v2  Mun-Mir-137-P1  Oan-Mir-137-P1-v1  Oan-Mir-137-P1-v2  Obi-Mir-137  Ocu-Mir-137-P1-v1  Ocu-Mir-137-P1-v2  Pbv-Mir-137-P1-v1  Pbv-Mir-137-P1-v2  Pma-Mir-137-o1  Rno-Mir-137-P1-v1  Rno-Mir-137-P1-v2  Sha-Mir-137-P1-v1  Sha-Mir-137-P1-v2  Sko-Mir-137  Spt-Mir-137-P1  Spu-Mir-137  Sto-Mir-137-P1  Tgu-Mir-137-P1-v1  Tgu-Mir-137-P1-v2  Xbo-Mir-137  Xla-Mir-137-P1  Xtr-Mir-137-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr2: 20145752-20145812 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-137-P1b-v2)
Mir-137-P1b-v2 chr2: 20145752-20145812 [-] UCSC Ensembl
Mir-137-P1b-v1 chr2: 20145753-20145811 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCUUUUUUUUCUGAGGCUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGCUCUCGUUGUUAUUGCUUAAGAAUACGCGUAGUUGAGGAGAGUCAUUGUCGACUGUCUUCGGG
Get precursor sequence
Structure
        10          20        30        40        50        60
CCCCCUUUUUUUUCUGA--|           UG   G           UG A    ACGGC 
                   GGCUCUCUUCGG  ACG GUAUUCUUGGG  G UAAU     U
                   CUGAGAGGAGUU  UGC CAUAAGAAUUC  U AUUG     C
GGGCUUCUGUCAGCUGUUA^           GA   G           GU -    UUGCU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-137-P1b-v2_5p*

mirBase accessionMIMAT0031972
Sequence
0- GACGGGUAUUCUUGGGUGGAUAAU -24
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Mature sequence

Dre-Mir-137-P1b-v2_3p

mirBase accessionMIMAT0001834
Sequence
38- UAUUGCUUAAGAAUACGCGUAGU -61
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Proposed targets TargetScanFish: dre-miR-137