MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-2970
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Oan-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE954653.1: 225941-225999 [+]
Clustered miRNAs
(< 50kb from Mir-2970)
Mir-191 KE954653.1: 219604-219667 [+]
Mir-425 KE954653.1: 223828-223889 [+]
Mir-2970 KE954653.1: 225941-225999 [+]
Precursor
(pre-Mir +30nt flank)
AUCAAAUACCUAUCAUCUUCUGCCACUGCUGACAGUCAGUAGUUGGUCUGGGGUAAGCAGGAAAUCUCAGAUCAUCUCUUGACUGUGGAUGGUGUAGGGGAAUUUCCUCCCCUUUUCCU
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Structure
        10           20         30        40        50         
AUCAAAUACCUAUCAUC---|     C    -  G        U  U         GUAAGC 
                    UUCUGC ACUG CU ACAGUCAG AG UGGUCUGGG      \
                    GGGAUG UGGU GG UGUCAGUU UC ACUAGACUC      A
UCCUUUUCCCCUCCUUUAAG^     -    A  -        C  U         UAAAGG 
       110       100         90         80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-2970_5p

mirBase accessionMIMAT0039091
Sequence
0- GACAGUCAGUAGUUGGUCUGGG -22
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Star sequence

Pbv-Mir-2970_3p*

mirBase accessionMIMAT0039092
Sequence
37- CAGAUCAUCUCUUGACUGUGGA -59
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