| MirGeneDB ID | Lch-Mir-2970 |
|---|---|
| Family name | MIR-2970 (all species) |
| Seed | ACAGUCA |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-2970 Ami-Mir-2970 Cli-Mir-2970 Cpi-Mir-2970 Gga-Mir-2970 Gja-Mir-2970 Mdo-Mir-2970 Mun-Mir-2970 Oan-Mir-2970 Pbv-Mir-2970 Sha-Mir-2970 Spt-Mir-2970 Tgu-Mir-2970 Xla-Mir-2970-P1 Xla-Mir-2970-P2 Xtr-Mir-2970 |
| Node of Origin (locus) | Sarcopterygii |
| Node of Origin (family) | Sarcopterygii |
| Genome context (LatCha1_add) |
JH129058.1: 47253-47308 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UUUCUCUCUCUCUCUUUCUCUGUCCCCACGGACAGUCAGCAGUUGGUCUGGUGUGAGGGGAUCUCAGAUCAGCUCUUGACUGUGGGUGGUGUAGAAGAGUUAGACAGCAAGGAAGGGet precursor sequence |
| Structure | 10 20 30 40 50 UUUCUCUCUCUCUCUUUC---| UCC GG C UGUGA UCUG CCAC ACAGUCAG AGUUGGUCUGG G AGAU GGUG UGUCAGUU UCGACUAGACU G GGAAGGAACGACAGAUUGAGA^ GU- GG C CUAGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Lch-Mir-2970_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GACAGUCAGCAGUUGGUCUGGU -22
Get sequence
|
| Star sequence | Lch-Mir-2970_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- CAGAUCAGCUCUUGACUGUGGG -56
Get sequence
|
