MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-2970
Paralogues
Orthologues Aca-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710564.1: 64511-64568 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-2970)		 Mir-191 NW_017710564.1: 63665-63728 [+] UCSC
Mir-425 NW_017710564.1: 64139-64201 [+] UCSC
Mir-2970 NW_017710564.1: 64511-64568 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGGGUGCCCGGGCCUCUUCCUGCCACUGCAGACAGUCAGCAGUUGGUCUGGCGUGAGCAGCAUUCUCAGAUCACCUCUUGGCUGUGGGUGGUGCAGAGAGCGCCGCACCUUUGCCACA
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Structure
        10           20        30        40        50        
GGGGUGCCCGGGCCUCU--  -|   C  UG AG        C  U        CGUGAG 
                   UC CUGC AC  C  ACAGUCAG AG UGGUCUGG      C
                   AG GACG UG  G  UGUCGGUU UC ACUAGACU      A
ACACCGUUUCCACGCCGCG  A^   -  GU GG        C  C        CUUACG 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-2970_5p
mirBase accessionMIMAT0038335
Sequence 
0- GACAGUCAGCAGUUGGUCUGGC -22
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Star sequence

Ami-Mir-2970_3p*
mirBase accessionMIMAT0038336
Sequence 
36- CAGAUCACCUCUUGGCUGUGGG -58
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