MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-430-P2

Family name MIR-430 (all species)
Seed AAGUGCU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-302c
Paralogues Ocu-Mir-430-P1  Ocu-Mir-430-P3  Ocu-Mir-430-P4  Ocu-Mir-430-P5 
Orthologues Ami-Mir-430-P2  Bta-Mir-430-P2  Cfa-Mir-430-P2  Cli-Mir-430-P2  Cmi-Mir-430-P2  Cpi-Mir-430-P2  Cpo-Mir-430-P2  Dno-Mir-430-P2  Dre-Mir-430-o2a1  Dre-Mir-430-o2a2  Dre-Mir-430-o2a3  Dre-Mir-430-o2a4  Dre-Mir-430-o2a5  Dre-Mir-430-o2a6  Dre-Mir-430-o2a7  Dre-Mir-430-o2a8  Dre-Mir-430-o2a9  Dre-Mir-430-o2a10  Dre-Mir-430-o2a11  Dre-Mir-430-o2a12  Dre-Mir-430-o2a13  Dre-Mir-430-o2a14  Dre-Mir-430-o2b  Dre-Mir-430-o2c1  Dre-Mir-430-o2c2  Dre-Mir-430-o2c3  Dre-Mir-430-o2d1  Dre-Mir-430-o2d2  Ete-Mir-430-P2  Gga-Mir-430-P2  Hsa-Mir-430-P2  Mdo-Mir-430-P2  Mml-Mir-430-P2  Mmu-Mir-430-P2  Oan-Mir-430-P2  Sha-Mir-430-P2  Spt-Mir-430-P2  Sto-Mir-430-P2  Tgu-Mir-430-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr15: 36769775-36769834 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P2)
Mir-430-P1 chr15: 36769637-36769702 [+] UCSC Ensembl
Mir-430-P2 chr15: 36769775-36769834 [+] UCSC Ensembl
Mir-430-P3 chr15: 36769951-36770011 [+] UCSC Ensembl
Mir-430-P4 chr15: 36770114-36770174 [+] UCSC Ensembl
Mir-92-P2a chr15: 36770238-36770297 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAACUUUCCGAGGUUGAAUGGAUCCCCUUUGCUUUAACAUGGGGGUACCUGCUGUGUGAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGGUGUCUCCAAACCGACCCAACUUUUGUA
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Structure
        10         20         30        40        50         
UAACUUUCCGAGGUUGAA-    UCC-|   UG  UU             C    GUGUG 
                   UGGA    CCUU  CU  AACAUGGGGGUAC UGCU     A
                   ACCU    GGAG  GA  UUGUACCUUCGUG AUGA     A
AUGUUUUCAACCCAGCCAA    CUGU^   GU  CU             A    AAACA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-430-P2_5p* (predicted)

mirBase accessionMIMAT0036318
Sequence
0- GCUUUAACAUGGGGGUACCUGCU -23
Get sequence
Mature sequence

Ocu-Mir-430-P2_3p (predicted)

mirBase accessionMIMAT0036319
Sequence
37- UAAGUGCUUCCAUGUUUCAGUGG -60
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