Mir-210-P15-v2

MirGeneDB ID

Obi-Mir-210-P15-v2

Family name

MIR-210 (all species)

Seed

UGUGCGU

Species

California two-spot octopus (Octopus bimaculoides)

MiRBase ID

Paralogues

Obi-Mir-210-P15-v1 Obi-Mir-210-P16

Orthologues

Aca-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cgi-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Ebu-Mir-210 Efe-Mir-210 Esc-Mir-210-P15-v1 Esc-Mir-210-P15-v2 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mml-Mir-210 Mmu-Mir-210 Mun-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ovu-Mir-210-P15-v1 Ovu-Mir-210-P15-v2 Pbv-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 Xtr-Mir-210

Node of Origin (locus)

Coleoidea

Node of Origin (family)

Bilateria

Genome context
(PRJNA270931_OBI)

KQ418188: 347835-347891 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUAGAACAAAACACUCGAUGUCGUAUGUUCGUCGCUGUCGCACGUUACUAGGAAACUCAUGGAUUCUUGUGCGUGUGACAGUGACUAUGCAUGGGCAUUCUAUGCUGCAGUUUUCCA

Get precursor sequence

Structure

        10          20        30         40        50        
GUAGAACAAAACACUCG--|    G     UC-               U  U    AACU 
                   AUGUC UAUGU   GUCGCUGUCGCACGU AC AGGA    C
                   UACGG GUACG   CAGUGACAGUGUGCG UG UCUU    A
ACCUUUUGACGUCGUAUCU^    -     UAU               -  U    AGGU 
     110       100         90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Obi-Mir-210-P15-v2_5p*

mirBase accession

None

Sequence

0- GUCGCUGUCGCACGUUACUAGGA -23

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Mature sequence

Obi-Mir-210-P15-v2_3p

mirBase accession

None

Sequence

36- UUGUGCGUGUGACAGUGACUA -57

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