Mir-210-P16

MirGeneDB ID

Obi-Mir-210-P16

Family name

MIR-210 (all species)

Species

California two-spot octopus (Octopus bimaculoides)

MiRBase ID

Paralogues

Obi-Mir-210-P15-v1

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Esc-Mir-210-P16 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Ovu-Mir-210-P16 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

Coleoidea

Node of Origin (family)

Bilateria

Genome context
(PRJNA270931_OBI)

KQ418188: 99773-99830 [-] Ensembl

Seed

UGUGCGU

Precursor
(pre-Mir +30nt flank)

AUGAUGAUGAUACUGCUGGUGGCUGCUGCAGUCACUGUCCCCCGUACUAACAUUUCUUUAAACGGUGUUGUGCGUGAGACAGCGACCGCAGAAGCUAACCACAUUCGCCAAAUCAUCA

Get precursor sequence

Structure

        10          20        30        40        50         
AUGAUGAUGAUACUGCU-  -|    G    A   A     CCC     U    UUUCUU 
                  GG UGGCU CUGC GUC CUGUC   CGUAC AACA      \
                  CC AUCGA GACG CAG GACAG   GCGUG UUGU      U
ACUACUAAACCGCUUACA  A^    A    C   C     AGU     -    GGCAAA 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Obi-Mir-210-P16_5p*

mirBase accession

None

Sequence

0- GUCACUGUCCCCCGUACUAACA -22

Get sequence

Mature sequence

Obi-Mir-210-P16_3p

mirBase accession

None

Sequence

37- UUGUGCGUGAGACAGCGACCG -58

Get sequence