MirGeneDB 3.0

MirGeneDB ID

Mml-Mir-489

Family name MIR-489 (all species)
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-489
Paralogues Mml-Mir-489-v1 
Orthologues Cfa-Mir-489  Cja-Mir-489  Dno-Mir-489  Eca-Mir-489  Gja-Mir-489  Laf-Mir-489  Lch-Mir-489  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_003339765.3_Mmul_10_traces)
CM014338.1: 112622810-112622871 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)
Mir-489-v2 CM014338.1: 112622810-112622871 [+] UCSC Ensembl
Mir-489-v1 CM014338.1: 112622811-112622870 [+] UCSC Ensembl
Mir-653 CM014338.1: 112623903-112623959 [+] UCSC Ensembl
Variant

Mml-Mir-489-v2

Seed GACAUCA
Precursor
(pre-Mir +30nt flank)
UGCUGACUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUUUACUUGAACCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGUUACAUAGGACAACAAGAGGUUUG
Get precursor sequence
Structure
        10          20        30        40        50        60
UGCUGACUACUGCUGUUG--|      C     G             CGC    UACUUGA 
                    GUGGCAG UUGGU GUCGUAUGUGUGG   CAUU       A
                    CAUUGUC AAUCG CGGCAUAUACACU   GUGA       C
GUUUGGAGAACAACAGGAUA^      A     A             ACA    GGAUUUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-489-v2_5p* (predicted)

mirBase accessionMIMAT0026883
Sequence
0- UGGUCGUAUGUGUGGCGCCAUU -22
Get sequence
Proposed targets TargetScanVert: mml-miR-489-5p
Mature sequence

Mml-Mir-489-v2_3p

mirBase accessionMIMAT0006349
Sequence
40- UGACAUCACAUAUACGGCAGCU -62
Get sequence
Proposed targets TargetScanVert: mml-miR-489-3p
Variant

Mml-Mir-489-v1

Seed UGACAUC
Precursor
(pre-Mir +30nt flank)
GCUGACUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUUUACUUGAACCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGUUACAUAGGACAACAAGAGGUUU
Get precursor sequence
Structure
        10          20        30        40        50         
GCUGACUACUGCUGUUG--|      C     G             CGC     ACUUGA 
                   GUGGCAG UUGGU GUCGUAUGUGUGG   CAUUU      A
                   CAUUGUC AAUCG CGGCAUAUACACU   GUGAG      C
UUUGGAGAACAACAGGAUA^      A     A             ACA     GAUUUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-489-v1_5p*

mirBase accessionMIMAT0026883
Sequence
0- GGUCGUAUGUGUGGCGCCAUUU -22
Get sequence
Proposed targets TargetScanVert: mml-miR-489-5p
Mature sequence

Mml-Mir-489-v1_3p

mirBase accessionMIMAT0006349
Sequence
38- GUGACAUCACAUAUACGGCAGC -60
Get sequence
Proposed targets TargetScanVert: mml-miR-489-3p