MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-137-P3a-v1

Family name MIR-137 (all species)
Seed UAUUGCU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-137-2
Paralogues Gmo-Mir-137-P1b-v1  Gmo-Mir-137-P1b-v2  Gmo-Mir-137-P3a-v2  Gmo-Mir-137-P3b-v1  Gmo-Mir-137-P3b-v2 
Orthologues Aca-Mir-137-P3-v1  Aca-Mir-137-P3-v2  Ami-Mir-137-P3-v1  Ami-Mir-137-P3-v2  Asu-Mir-137  Bfl-Mir-137  Cbr-Mir-137  Cel-Mir-137  Cgi-Mir-137  Cli-Mir-137-P3  Cpi-Mir-137-P3-v1  Cpi-Mir-137-P3-v2  Cte-Mir-137  Dan-Mir-137  Dma-Mir-137  Dme-Mir-137  Dmo-Mir-137  Dpu-Mir-137  Dsi-Mir-137  Dya-Mir-137  Ebu-Mir-137  Esc-Mir-137  Gga-Mir-137-P3-v1  Gga-Mir-137-P3-v2  Gja-Mir-137-P3  Hme-Mir-137  Isc-Mir-137  Lan-Mir-137  Lch-Mir-137-P3  Lgi-Mir-137  Loc-Mir-137-P3-v1  Loc-Mir-137-P3-v2  Mal-Mir-137-P3a-v1  Mal-Mir-137-P3a-v2  Mdo-Mir-137-P3-v1  Mdo-Mir-137-P3-v2  Mun-Mir-137-P3  Oan-Mir-137-P3-v1  Oan-Mir-137-P3-v2  Obi-Mir-137  Pbv-Mir-137-P3-v1  Pbv-Mir-137-P3-v2  Pma-Mir-137-o3  Sha-Mir-137-P3  Sko-Mir-137  Spu-Mir-137  Xbo-Mir-137 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1590: 3341-3399 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-137-P3a-v1)
Mir-137-P3a-v2 GeneScaffold_1590: 3340-3400 [+] UCSC Ensembl
Mir-137-P3a-v1 GeneScaffold_1590: 3341-3399 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGGAAUGUCUGAGUGCUCCGUCUCGGCCACGGGUAUUCUUGGGUUGAUAAUACAGAUGUUGAUGUUAUUGCUUGAGAAUACGCGUAGCUGAGGGGAAGCCAUGGCCGACGGACAGAG
Get precursor sequence
Structure
        10           20        30        40        50         
GGAGGAAUGUCUGAGUGC---|  G       C   G       UG   U       CAGA 
                     UCC UCUCGGC ACG GUAUUCU  GGU GAUAAUA    U
                     AGG GGAGUCG UGC CAUAAGA  UCG UUAUUGU    G
GAGACAGGCAGCCGGUACCGA^  -       A   G       GU   -       AGUU 
       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-137-P3a-v1_5p*

mirBase accessionMIMAT0044126
Sequence
0- ACGGGUAUUCUUGGGUUGAUAAUA -24
Get sequence
Mature sequence

Gmo-Mir-137-P3a-v1_3p

mirBase accessionMIMAT0044058
Sequence
36- UUAUUGCUUGAGAAUACGCGUAG -59
Get sequence