Mir-137-o3

MirGeneDB ID

Pma-Mir-137-o3

Family name

MIR-137 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-137-o1 Pma-Mir-137-o2

Orthologues

Aca-Mir-137-P3-v1 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P3-v1 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Cbr-Mir-137 Cel-Mir-137 Cli-Mir-137-P3 Cpi-Mir-137-P3-v1 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dpu-Mir-137 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Esc-Mir-137 Gga-Mir-137-P3-v1 Gja-Mir-137-P3 Gmo-Mir-137-P3a-v1 Gmo-Mir-137-P3b-v1 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Isc-Mir-137 Lan-Mir-137 Lch-Mir-137-P3 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Loc-Mir-137-P3-v1 Mal-Mir-137-P3a-v1 Mal-Mir-137-P3b-v1 Mdo-Mir-137-P3-v1 Mgi-Mir-137 Mom-Mir-137 Mun-Mir-137-P3 Neu-Mir-137-P3 Oan-Mir-137-P3-v1 Obi-Mir-137 Ofu-Mir-137 Pau-Mir-137 Pbv-Mir-137-P3-v1 Pca-Mir-137 Pdu-Mir-137 Pve-Mir-137 Rph-Mir-137 Sha-Mir-137-P3 Sko-Mir-137 Snu-Mir-137 Spu-Mir-137 Tni-Mir-137-P3b Tur-Mir-137 War-Mir-137 Xbo-Mir-137

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046069.1: 14010206-14010263 [-] UCSC Ensembl

Seed

UAUUGCU

Precursor
(pre-Mir +30nt flank)

GUAUCAGCAGCAGCAUCGGCCCCGCCGGCCACGUGUAUUCUUGGUGAAUAAUACAGAUGUCGCUGUUAUUGCUUAAGAAUACACGUAGCCGUAGGGAGCCCUGACAGCGAGCGACUUC

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Structure

        10         20         30        40        50        
GUAUCAGCAGCAGCAUC-   -|  GC    C              UG      ACAGA 
                  GGC CCC  CGGC ACGUGUAUUCUUGG  AAUAAU     U
                  CCG GGG  GCCG UGCACAUAAGAAUU  UUAUUG     G
CUUCAGCGAGCGACAGUC   A^  AU    A              CG      UCGCU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-137-o3_5p* (predicted)

mirBase accession

None

Sequence

0- ACGUGUAUUCUUGGUGAAUAAU -22

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Mature sequence

Pma-Mir-137-o3_3p

mirBase accession

None

Sequence

35- UUAUUGCUUAAGAAUACACGUAG -58

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