MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-144

Family name MIR-144 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-144
Paralogues Eca-Mir-144-v1 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Laf-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 CM009158.1: 43071876-43071917 [-] UCSC Ensembl
Mir-144-v1 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Mir-144-v2 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Variant

Eca-Mir-144-v2
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
CUCCCUGAGCCCCCUGCAGGUCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUACCCCCAGCUCUGGAGCCUGAU
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Structure
        10         20         30        40        50         
CUCCCUGAGCCCCCUGCA-   -|  U      G        A         A  UUGCG 
                   GGU CCC GGCUGG AUAUCAUC UAUACUGUA GU     A
                   CCA GGG CUGAUC UGUAGUAG AUAUGACAU CA     U
UAGUCCGAGGUCUCGACCC   U^  C      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-144-v2_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Eca-Mir-144-v2_3p*
mirBase accessionMIMAT0013024
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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Variant

Eca-Mir-144-v1
Seed ACAGUAU
Precursor
(pre-Mir +30nt flank)		 
CUCCCUGAGCCCCCUGCAGGUCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUACCCCCAGCUCUGGAGCCUGAU
Get precursor sequence
Structure
        10         20         30        40        50         
CUCCCUGAGCCCCCUGCA-   -|  U      G        A         AGUUUGCG 
                   GGU CCC GGCUGG AUAUCAUC UAUACUGUA        \
                   CCA GGG CUGAUC UGUAGUAG AUAUGACAU        A
UAGUCCGAGGUCUCGACCC   U^  C      A        -         CACAGAGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-144-v1_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
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Mature sequence

Eca-Mir-144-v1_3p
mirBase accessionMIMAT0013024
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
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