MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-101-P2

Family name MIR-101 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-101-2
Paralogues Eca-Mir-101-P1-v1  Eca-Mir-101-P2-v1 
Orthologues Aca-Mir-101-P2-v1  Ami-Mir-101-P2-v1  Bta-Mir-101-P2-v1  Cfa-Mir-101-P2-v1  Cja-Mir-101-P2-v1  Cli-Mir-101-P2-v1  Cmi-Mir-101-P2-v1  Cpi-Mir-101-P2-v1  Cpo-Mir-101-P2-v1  Dno-Mir-101-P2-v1  Dre-Mir-101-P2-v1  Ete-Mir-101-P2-v1  Gga-Mir-101-P2-v1  Gja-Mir-101-P2-v1  Gmo-Mir-101-P2-v1  Hsa-Mir-101-P2-v1  Laf-Mir-101-P2-v1  Lch-Mir-101-P2  Loc-Mir-101-P2-v1  Mal-Mir-101-P2-v1  Mdo-Mir-101-P2-v1  Mml-Mir-101-P2-v1  Mmr-Mir-101-P2-v1  Mmu-Mir-101-P2-v1  Mun-Mir-101-P2-v1  Neu-Mir-101-P2-v1  Oan-Mir-101-P2-v1  Ocu-Mir-101-P2-v1  Pab-Mir-101-P2-v1  Pbv-Mir-101-P2-v1  Rno-Mir-101-P2-v1  Sha-Mir-101-P2-v1  Spt-Mir-101-P2  Sto-Mir-101-P2-v1  Tgu-Mir-101-P2-v1  Tni-Mir-101-P2-v1  Xla-Mir-101-P2a-v1  Xla-Mir-101-P2b-v1  Xtr-Mir-101-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009170.1: 25728399-25728455 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-101-P2-v2)		 Mir-101-P2-v1 CM009170.1: 25728398-25728456 [+] UCSC Ensembl
Mir-101-P2-v2 CM009170.1: 25728399-25728455 [+] UCSC Ensembl
Variant

Eca-Mir-101-P2-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
AGGUAGAUAUGAGACUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGAUGCUGUAUAUCUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUUGAGAAAGGG
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Structure
        10          20        30        40        50        
AGGUAGAUAUGAGACUGA--| UG  C                    CGA    GUAUA 
                    AC  UC UUUUUCGGUUAUCAUGGUAC   UGCU     U
                    UG  GG AAGAAGUCAAUAGUGUCAUG   AUGG     C
GGGAAAGAGUUACACUACCG^ GU  U                    AC-    AAAGU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-101-P2-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGGUUAUCAUGGUACCGAUGCUG -23
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Mature sequence

Eca-Mir-101-P2-v2_3p
mirBase accessionMIMAT0012951
Sequence 
35- GUACAGUACUGUGAUAACUGAA -57
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Variant

Eca-Mir-101-P2-v1
Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)		 
CAGGUAGAUAUGAGACUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGAUGCUGUAUAUCUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUUGAGAAAGGGG
Get precursor sequence
Structure
        10          20        30        40        50         
CAGGUAGAUAUGAGACUGA--| UG  C                    CGA    GUAUA 
                     AC  UC UUUUUCGGUUAUCAUGGUAC   UGCU     U
                     UG  GG AAGAAGUCAAUAGUGUCAUG   AUGG     C
GGGGAAAGAGUUACACUACCG^ GU  U                    AC-    AAAGU 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-101-P2-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGGUUAUCAUGGUACCGAUGCU -23
Get sequence
Mature sequence

Eca-Mir-101-P2-v1_3p
mirBase accessionMIMAT0012951
Sequence 
37- UACAGUACUGUGAUAACUGAAG -59
Get sequence