MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-143

Family name MIR-143 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)		 FYBX02000147.1: 4053910-4053963 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-145 FYBX02000147.1: 4053748-4053806 [-] UCSC Ensembl
Mir-143 FYBX02000147.1: 4053910-4053963 [-] UCSC Ensembl
Seed GAGAUGA
Precursor
(pre-Mir +30nt flank)		 
CAUAGUGUCUGGGAGAAGCUGCUUGCCAGGGGAGCAGUACUGCAUCUCUGGUGAGUCCAAGUCUGAGAUGAAGCACUGUGACCCUGGUAGGCAGUAAUACUUCAGGACAAGUGG
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Structure
        10          20        30        40        50      
CAUAGUGUCUGGGAGAA--|             GA     A  G      UGGUGAG 
                   GCUGCUUGCCAGGG  GCAGU CU CAUCUC       U
                   UGACGGAUGGUCCC  UGUCA GA GUAGAG       C
GGUGAACAGGACUUCAUAA^             AG     C  A      UCUGAAC 
  110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ebu-Mir-143_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGAGCAGUACUGCAUCUCUGG -21
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Mature sequence

Ebu-Mir-143_3p
mirBase accessionNone
Sequence 
33- UGAGAUGAAGCACUGUGACCC -54
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