MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-143-P1

Family name MIR-143 (all species)
Seed GAGAUGA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-143
Paralogues Xla-Mir-143-P2 
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmu-Mir-143  Mun-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xtr-Mir-143 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 33609524-33609578 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143-P1)		 Mir-145-P1 NC_030728.1: 33608579-33608638 [-] UCSC Ensembl
Mir-143-P1 NC_030728.1: 33609524-33609578 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAGACGCACCCACUGUCUCCCAGCCCAAGGUGCAGUGCUGCAUCUCUGGUCAAUUGUGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGGGAAACAUGCGGCCACCCAGGA
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Structure
        10          20        30        40        50       
ACCAGACGCACCCACUG--|     AG   A  G         G      UGGUCAAU 
                   UCUCCC  CCC AG UGCAGUGCU CAUCUC        \
                   AGGGGG  GGG UC AUGUCACGA GUAGAG        U
AGGACCCACCGGCGUACAA^     AA   C  G         A      UCUGAGUG 
   110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-143-P1_5p*
mirBase accessionMIMAT0046456
Sequence 
0- GGUGCAGUGCUGCAUCUCUGGUC -23
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Mature sequence

Xla-Mir-143-P1_3p
mirBase accessionMIMAT0046457
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
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