MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-143

Family name MIR-143 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-143
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_6: 11376289-11376343 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-143 scaffold_6: 11376289-11376343 [+] UCSC
Mir-145 scaffold_6: 11377829-11377888 [+] UCSC
Seed GAGAUGA
Precursor
(pre-Mir +30nt flank)		 
CCAGCAGCGUGGCCCUGUCCCCCAGCCUGAGGUGCAGUGCUGCAUCUCUGGUCAGUUGGGAGUCUGAGAUGAAGCACUGUAGCUCAGGAAGGGAGAAGUCGUUCUGCAGCCUCGG
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Structure
        10          20        30        40        50       
CCAGCAGCGUGGCCCUG--| C   AG      G         G      UGGUCAGU 
                   UC CCC  CCUGAG UGCAGUGCU CAUCUC        \
                   AG GGG  GGACUC AUGUCACGA GUAGAG        U
GGCUCCGACGUCUUGCUGA^ A   AA      G         A      UCUGAGGG 
   110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-143_5p*
mirBase accessionMIMAT0047010
Sequence 
0- GGUGCAGUGCUGCAUCUCUGG -21
Get sequence
Mature sequence

Cpo-Mir-143_3p
mirBase accessionMIMAT0047011
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
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