Mir-143

MirGeneDB ID

Xtr-Mir-143

Family name

MIR-143 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-143

Paralogues

Orthologues

Aca-Mir-143 Ami-Mir-143 Bta-Mir-143 Cfa-Mir-143 Cja-Mir-143 Cli-Mir-143 Cmi-Mir-143 Cpi-Mir-143 Cpo-Mir-143 Dno-Mir-143 Dre-Mir-143 Ebu-Mir-143 Eca-Mir-143 Ete-Mir-143 Gga-Mir-143 Gja-Mir-143 Gmo-Mir-143 Hsa-Mir-143 Laf-Mir-143 Lch-Mir-143 Loc-Mir-143 Mal-Mir-143 Mdo-Mir-143 Mml-Mir-143 Mmr-Mir-143 Mmu-Mir-143 Mun-Mir-143 Neu-Mir-143 Oan-Mir-143 Ocu-Mir-143 Pab-Mir-143 Pbv-Mir-143 Pma-Mir-143 Rno-Mir-143 Sha-Mir-143 Spt-Mir-143 Sto-Mir-143 Tgu-Mir-143 Xla-Mir-143-P1 Xla-Mir-143-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr3: 31806273-31806327 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-143)

Mir-143 chr3: 31806273-31806327 [+] UCSC Ensembl
Mir-145 chr3: 31807233-31807292 [+] UCSC Ensembl

Seed

GAGAUGA

Precursor
(pre-Mir +30nt flank)

ACGGCAGACACCCACUGUCUCCCAGCCCAAGGUGCAGUGCUGCAUCUCUGGUCAGUUGUGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGGGAAUAACACAGCAACUCAGAA

Get precursor sequence

Structure

        10          20        30        40        50       
ACGGCAGACACCCACUG--|     AG   A  G         G      UGGUCAGU 
                   UCUCCC  CCC AG UGCAGUGCU CAUCUC        \
                   AGGGGG  GGG UC AUGUCACGA GUAGAG        U
AAGACUCAACGACACAAUA^     AA   C  G         A      UCUGAGUG 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-143_5p*

mirBase accession

None

Sequence

0- GGUGCAGUGCUGCAUCUCUGGUC -23

Get sequence

Mature sequence

Xtr-Mir-143_3p

mirBase accession

MIMAT0003686

Sequence

34- UGAGAUGAAGCACUGUAGCUC -55

Get sequence

Proposed targets

TargetScanVert: xtr-miR-143