Mir-143

MirGeneDB ID

Cmi-Mir-143

Family name

MIR-143 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-143 Ami-Mir-143 Bta-Mir-143 Cfa-Mir-143 Cja-Mir-143 Cli-Mir-143 Cpi-Mir-143 Cpo-Mir-143 Dno-Mir-143 Dre-Mir-143 Ebu-Mir-143 Eca-Mir-143 Ete-Mir-143 Gga-Mir-143 Gja-Mir-143 Gmo-Mir-143 Hsa-Mir-143 Laf-Mir-143 Lch-Mir-143 Loc-Mir-143 Mal-Mir-143 Mdo-Mir-143 Mml-Mir-143 Mmr-Mir-143 Mmu-Mir-143 Mun-Mir-143 Neu-Mir-143 Oan-Mir-143 Ocu-Mir-143 Pab-Mir-143 Pbv-Mir-143 Pma-Mir-143 Rno-Mir-143 Sha-Mir-143 Spt-Mir-143 Sto-Mir-143 Tgu-Mir-143 Xla-Mir-143-P1 Xla-Mir-143-P2 Xtr-Mir-143

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636010.1: 209440-209494 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-143)

Mir-145 KI636010.1: 208213-208272 [-] UCSC Ensembl
Mir-143 KI636010.1: 209440-209494 [-] UCSC Ensembl

Seed

GAGAUGA

Precursor
(pre-Mir +30nt flank)

GGAGGACGGCCAACACAUCAAUCAGCCAGAGGUGCAGUGCUGCAUCUCUGGUUAGUUGUGAGUCUGAGAUGAAGCACUGUAGCUCUGGAGGAUGAACACUGCAUCAAUGGCCUUG

Get precursor sequence

Structure

        10           20        30        40        50       
GGAGGACGGCCAACACA---|  A  AG      G         G      UGGUUAGU 
                    UCA UC  CCAGAG UGCAGUGCU CAUCUC        \
                    AGU AG  GGUCUC AUGUCACGA GUAGAG        U
GUUCCGGUAACUACGUCACA^  -  GA      G         A      UCUGAGUG 
   110       100         90        80        70        60

Deep sequencing

Go to detailed chart

Comment

Based on the 3-DcRNAs and phylogenetic considerations it is assumed that the templated 3' U is a post-transcriptional addition.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-143_5p*

mirBase accession

None

Sequence

0- GGUGCAGUGCUGCAUCUCUGG -21

Get sequence

Mature sequence

Cmi-Mir-143_3p

mirBase accession

None

Sequence

34- UGAGAUGAAGCACUGUAGCUC -55

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