MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-143

Family name MIR-143 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 46184193-46184247 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-143 CM021916.1: 46184193-46184247 [+] UCSC Ensembl
Mir-145 CM021916.1: 46185918-46185977 [+] UCSC Ensembl
Seed GAGAUGA
Precursor
(pre-Mir +30nt flank)		 
GGAGCAGCACGGCCCUGUCUCCCAGCCUGAGGUGCAGUGCUGCAUCUCUGGUCAGUUGGGAGUCUGAGAUGAAGCACUGUAGCUCAGGAAGAGAGAAGUUGUUCUGCAGCCACCA
Get precursor sequence
Structure
        10          20        30        40        50       
GGAGCAGCACGGCCCUG--|   CCAG      G         G      UGGUCAGU 
                   UCUC    CCUGAG UGCAGUGCU CAUCUC        \
                   AGAG    GGACUC AUGUCACGA GUAGAG        U
ACCACCGACGUCUUGUUGA^   AGAA      G         A      UCUGAGGG 
   110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Cja-Mir-143_5p*
mirBase accessionNone
Sequence 
0- GGUGCAGUGCUGCAUCUCUGGU -22
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Mature sequence

Cja-Mir-143_3p
mirBase accessionNone
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
Get sequence