| MirGeneDB ID | Spt-Mir-143 |
|---|---|
| Family name | MIR-143 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-143 Ami-Mir-143 Bta-Mir-143 Cfa-Mir-143 Cja-Mir-143 Cli-Mir-143 Cmi-Mir-143 Cpi-Mir-143 Cpo-Mir-143 Dno-Mir-143 Dre-Mir-143 Ebu-Mir-143 Eca-Mir-143 Ete-Mir-143 Gga-Mir-143 Gja-Mir-143 Gmo-Mir-143 Hsa-Mir-143 Laf-Mir-143 Lch-Mir-143 Loc-Mir-143 Mal-Mir-143 Mdo-Mir-143 Mml-Mir-143 Mmr-Mir-143 Mmu-Mir-143 Mun-Mir-143 Neu-Mir-143 Oan-Mir-143 Ocu-Mir-143 Pab-Mir-143 Pbv-Mir-143 Pma-Mir-143 Rno-Mir-143 Sha-Mir-143 Sto-Mir-143 Tgu-Mir-143 Xla-Mir-143-P1 Xla-Mir-143-P2 Xtr-Mir-143 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01015368.1: 57028-57082 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-143) |
Mir-143
QEPC01015368.1: 57028-57082 [+]
UCSC
Ensembl
Mir-145 QEPC01015368.1: 58297-58356 [+] UCSC Ensembl |
| Seed | GAGAUGA |
| Precursor (pre-Mir +30nt flank) |
CCAGCCCUCCUUGAAUGUCUCCCAGCCCAAGGUGCAGUGCUGCAUCUCUGGUCAGUUGUGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGAGGAACUGUGCGCCAGAGGAACGet precursor sequence |
| Structure | 10 20 30 40 50 CCAGCCCUCCUUGAAUG--| AG A G G UGGUCAGU UCUCCC CCC AG UGCAGUGCU CAUCUC \ GGAGGG GGG UC AUGUCACGA GUAGAG U CAAGGAGACCGCGUGUCAA^ AA C G A UCUGAGUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Spt-Mir-143_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGUGCAGUGCUGCAUCUCUGG -21
Get sequence
|
| Mature sequence | Spt-Mir-143_3p (predicted) |
| mirBase accession | None |
| Sequence |
34- UGAGAUGAAGCACUGUAGCUC -55
Get sequence
|
