MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-281-P1

Family name MIR-281 (all species)
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-281-1
Paralogues Dme-Mir-281-P1-v1  Dme-Mir-281-P2-v1 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dmo-Mir-281-P1-v1  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dya-Mir-281-P1-v1  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gpa-Mir-281-P1-v1  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Nephrozoa
Genome context
(Drosophila_melanogaster_BDGP6)		 2R: 12170384-12170448 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P1-v2)		 Mir-988 2R: 12158888-12158945 [-] UCSC Ensembl
Mir-281-P2-v1 2R: 12170164-12170230 [-] UCSC Ensembl
Mir-281-P2-v2 2R: 12170164-12170230 [-] UCSC Ensembl
Mir-281-P1-v1 2R: 12170383-12170449 [-] UCSC Ensembl
Mir-281-P1-v2 2R: 12170384-12170448 [-] UCSC Ensembl
Variant

Dme-Mir-281-P1-v2
Seed UGUCAUG
Precursor
(pre-Mir +30nt flank)		 
AAAUCGAAUCCAAAUGCGAAUAAGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGAAACUAUUUAAUAUCACUGUCAUGGAAUUGCUCUCUUUGUAUAAUAUUCGACGAUGCGCUGUGAGGCAA
Get precursor sequence
Structure
        10           20        30        40         50        60  
AAAUCGAAUCCAAAUGC---|    AG  A           UG-     C      CCAGAAACU 
                    GAAUA  UG AUAAAGAGAGC   UCCGU GACAGU         \
                    CUUAU  AU UGUUUCUCUCG   AGGUA CUGUCA         A
AACGGAGUGUCGCGUAGCAG^    A-  A           UUA     -      CUAUAAUUU 
   120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-281-P1-v2_5p*
mirBase accessionMIMAT0000344
Sequence 
0- AAGAGAGCUGUCCGUCGACAGUC -23
Get sequence
Proposed targets microrna.org: MIMAT0000344
Mature sequence

Dme-Mir-281-P1-v2_3p
mirBase accessionMIMAT0000345
Sequence 
42- CUGUCAUGGAAUUGCUCUCUUUG -65
Get sequence
Proposed targets microrna.org: MIMAT0000345
Variant

Dme-Mir-281-P1-v1
Seed GUCAUGG
Precursor
(pre-Mir +30nt flank)		 
CAAAUCGAAUCCAAAUGCGAAUAAGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGAAACUAUUUAAUAUCACUGUCAUGGAAUUGCUCUCUUUGUAUAAUAUUCGACGAUGCGCUGUGAGGCAAU
Get precursor sequence
Structure
        10           20        30        40         50        60   
CAAAUCGAAUCCAAAUG---|     AG  A           UG-     C      CCAGAAACU 
                    CGAAUA  UG AUAAAGAGAGC   UCCGU GACAGU         \
                    GCUUAU  AU UGUUUCUCUCG   AGGUA CUGUCA         A
UAACGGAGUGUCGCGUAGCA^     A-  A           UUA     -      CUAUAAUUU 
     120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-281-P1-v1_5p*
mirBase accessionMIMAT0000344
Sequence 
0- AAAGAGAGCUGUCCGUCGACAGU -23
Get sequence
Proposed targets microrna.org: MIMAT0000344
Mature sequence

Dme-Mir-281-P1-v1_3p
mirBase accessionMIMAT0000345
Sequence 
44- UGUCAUGGAAUUGCUCUCUUUGU -67
Get sequence
Proposed targets microrna.org: MIMAT0000345