Mir-127

MirGeneDB ID

Cpo-Mir-127

Family name

MIR-127 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-127

Paralogues

Orthologues

Bta-Mir-127 Cfa-Mir-127 Cja-Mir-127 Dno-Mir-127 Eca-Mir-127 Ete-Mir-127 Hsa-Mir-127 Laf-Mir-127 Mml-Mir-127 Mmr-Mir-127 Mmu-Mir-127 Ocu-Mir-127 Pab-Mir-127 Rno-Mir-127

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_111: 953628-953683 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-127)

Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC

Seed

CGGAUCC

Precursor
(pre-Mir +30nt flank)

GAUCUCGCUGUGAUCACUGUCUCCAGCCUGCUGAAGCUCAGAGGGCUCUGAUUCAGAAAGAUCAUCGGAUCCGUCUGAGCUUGGCUGGUCGGAAGUCUCAUCAUCUGCUUCCUUCG

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Structure

        10        20          30        40        50        
GAUCUCGCUGUGAUCACUGUC--|  A   U   G         G  C      UCAGA 
                       UCC GCC GCU AAGCUCAGA GG UCUGAU     \
                       AGG UGG CGG UUCGAGUCU CC AGGCUA     A
GCUUCCUUCGUCUACUACUCUGA^  C   U   -         G  U      CUAGA 
    110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-127_5p*

mirBase accession

MIMAT0046972

Sequence

0- CUGAAGCUCAGAGGGCUCUGAUU -23

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Mature sequence

Cpo-Mir-127_3p

mirBase accession

MIMAT0046973

Sequence

34- UCGGAUCCGUCUGAGCUUGGCU -56

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