MirGeneDB

MirGeneDB ID

Cli-Mir-133-P2-v2

Family name MIR-133 (all species)
Seed UGGUCCC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-133a-1
Paralogues Cli-Mir-133-P1-v1  Cli-Mir-133-P1-v2  Cli-Mir-133-P2-v1  Cli-Mir-133-P3-v1  Cli-Mir-133-P3-v2  Cli-Mir-133-P4-v1  Cli-Mir-133-P4-v2 
Orthologues Aae-Mir-133  Aca-Mir-133-P2-v1  Aca-Mir-133-P2-v2  Ami-Mir-133-P2-v1  Ami-Mir-133-P2-v2  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P2-v1  Bta-Mir-133-P2-v2  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P2-v1  Cfa-Mir-133-P2-v2  Cin-Mir-133  Cpi-Mir-133-P2-v1  Cpi-Mir-133-P2-v2  Cpo-Mir-133-P2-v1  Cpo-Mir-133-P2-v2  Cte-Mir-133  Dan-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P2-v1  Dno-Mir-133-P2-v2  Dpu-Mir-133  Dre-Mir-133-P2-v1  Dre-Mir-133-P2-v2  Efe-Mir-133  Ete-Mir-133-P2-v1  Ete-Mir-133-P2-v2  Gga-Mir-133-P2-v1  Gga-Mir-133-P2-v2  Hme-Mir-133  Hsa-Mir-133-P2-v1  Hsa-Mir-133-P2-v2  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Mdo-Mir-133-P2-v1  Mdo-Mir-133-P2-v2  Mml-Mir-133-P2-v1  Mml-Mir-133-P2-v2  Mmu-Mir-133-P2-v1  Mmu-Mir-133-P2-v2  Oan-Mir-133-P2-v1  Oan-Mir-133-P2-v2  Ocu-Mir-133-P2-v1  Ocu-Mir-133-P2-v2  Rno-Mir-133-P2-v1  Rno-Mir-133-P2-v2  Sha-Mir-133-P2-v1  Sha-Mir-133-P2-v2  Spu-Mir-133  Sto-Mir-133-P2-v1  Sto-Mir-133-P2-v2  Tca-Mir-133  Tgu-Mir-133-P2-v1  Tgu-Mir-133-P2-v2  Xtr-Mir-133-P2-v1  Xtr-Mir-133-P2-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(colLiv2)
scaffold23: 295639-295698 [-]
Clustered MiRNAs
(< 10kb from Mir-133-P2-v2)
Mir-133-P2-v1 scaffold23: 295639-295698 [-]
Mir-133-P2-v2 scaffold23: 295639-295698 [-]
Mir-1-P2 scaffold23: 298717-298777 [-]
Precursor
(pre-Mir +30nt flank)
UAACCUUCCUGCACUCCAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUCACUACAGGAUUUCUC
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Structure
        10          20        30        40        50         
UAACCUUCCUGCACUCC--|    UUU    A       AA  U  A       CACCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUA      U
CUCUUUAGGACAUCACUAG^    UAU    G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cli-Mir-133-P2-v2_5p*

MirBase accessionMIMAT0038509
Sequence
0- AGCUGGUAAAAUGGAACCAAAU -22
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Mature sequence

Cli-Mir-133-P2-v2_3p

MirBase accessionMIMAT0038510
Sequence
38- UUGGUCCCCUUCAACCAGCUGU -60
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