MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-92-o78

Family name MIR-92 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4009b
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o70  Cin-Mir-92-o71  Cin-Mir-92-o72  Cin-Mir-92-o73  Cin-Mir-92-o74  Cin-Mir-92-o75  Cin-Mir-92-o76  Cin-Mir-92-o77 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)		 HT000037.1: 4884-4935 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o78)		 Mir-92-o78 HT000037.1: 4884-4935 [-] UCSC Ensembl
Mir-92-o77 HT000037.1: 4978-5031 [-] UCSC Ensembl
Mir-92-o76 HT000037.1: 5092-5146 [-] UCSC Ensembl
Mir-92-o75 HT000037.1: 5191-5250 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
AACUCCCAUCUAAACACGAAUGACAGUCAUGGUAUGUUUAGUGUUCAAGAGCAAGCAUAGCUAUUGCACACUAAUGUACCCUGGCUGUUUUAUCACUCUCAACAACGAAGAA
Get precursor sequence
Structure
        10         20         30        40        50      
AACUCCCAUCUAAACAC-  AU-|       U        U     U   G   AAG 
                  GA   GACAGUCA GGUAUGUU AGUGU CAA AGC   \
                  CU   UUGUCGGU CCAUGUAA UCACA GUU UCG   C
AAGAAGCAACAACUCUCA  AUU^       C        -     C   A   AUA 
110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-92-o78_5p*
mirBase accessionMIMAT0016503
Sequence 
0- GGUAUGUUUAGUGUUCAAGAGC -22
Get sequence
Mature sequence

Cin-Mir-92-o78_3p
mirBase accessionMIMAT0016504
Sequence 
31- UAUUGCACACUAAUGUACCCU -52
Get sequence