MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-92-o74

Family name MIR-92 (all species)
Seed AUUGCAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-92c
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o70  Cin-Mir-92-o71  Cin-Mir-92-o72  Cin-Mir-92-o73  Cin-Mir-92-o75  Cin-Mir-92-o76  Cin-Mir-92-o77  Cin-Mir-92-o78 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)
3: 885439-885494 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o74)
Mir-92-o72 3: 884650-884701 [+] UCSC Ensembl
Mir-92-o73 3: 884985-885041 [+] UCSC Ensembl
Mir-92-o74 3: 885439-885494 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCAAACUUAUAAACUGUACCUGCAUACUUAGGCCUGGCGAAGUGCAUUGCGUUGUCAUGGUCGUAUUGCACUCGUCCCGGUCUAUGUAUCUGGUAAAAACACAACGAACACGGAA
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Structure
        10           20        30         40        50       
CCCAAACUUAUAAACUG---|   UGC    U      U  -   A     U    UUGU 
                    UACC   AUAC UAGGCC GG CGA GUGCA UGCG    C
                    AUGG   UAUG AUCUGG CC GCU CACGU AUGC    A
AAGGCACAAGCAACACAAAA^   UC-    U      C  U   -     U    UGGU 
    110       100         90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-92-o74_5p*

mirBase accessionMIMAT0015255
Sequence
0- AGGCCUGGCGAAGUGCAUUGCGUU -24
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Mature sequence

Cin-Mir-92-o74_3p

mirBase accessionMIMAT0006098
Sequence
34- UAUUGCACUCGUCCCGGUCUAU -56
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