MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-92-o72

Family name MIR-92 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-92a
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o70  Cin-Mir-92-o71  Cin-Mir-92-o73  Cin-Mir-92-o74  Cin-Mir-92-o75  Cin-Mir-92-o76  Cin-Mir-92-o77  Cin-Mir-92-o78 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)		 3: 884650-884701 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o72)		 Mir-92-o72 3: 884650-884701 [+] UCSC Ensembl
Mir-92-o73 3: 884985-885041 [+] UCSC Ensembl
Mir-92-o74 3: 885439-885494 [+] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UUUAGUGAAGUUUGAUUAUAUAUUACUCGACGGCUGGUACAAGAGCACGAUCGAUUAGGAUAUUGCACUUGUCCCGGUCUUAGGGUGGUAUAAAAAAGCAACUUAUCACAUU
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Structure
        10          20        30        40        50     
UUUAGUGAAGUUUGAUUA--|         GAC      U     A   CG   GA 
                    UAUAUUACUC   GGCUGG ACAAG GCA  AUC  U
                    AUAUGGUGGG   CUGGCC UGUUC CGU  UAG  U
UUACACUAUUCAACGAAAAA^         AUU      C     A   UA   GA 
110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-92-o72_5p*
mirBase accessionMIMAT0015253
Sequence 
0- CGGCUGGUACAAGAGCACGAUC -22
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Mature sequence

Cin-Mir-92-o72_3p
mirBase accessionMIMAT0006096
Sequence 
30- UAUUGCACUUGUCCCGGUCUUA -52
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