MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-92-o71

Family name MIR-92 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4038
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o70  Cin-Mir-92-o72  Cin-Mir-92-o73  Cin-Mir-92-o74  Cin-Mir-92-o75  Cin-Mir-92-o76  Cin-Mir-92-o77  Cin-Mir-92-o78 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)		 1: 1926125-1926182 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o71)		 Mir-92-o69 1: 1925379-1925436 [+] UCSC Ensembl
Mir-92-o70 1: 1925679-1925732 [+] UCSC Ensembl
Mir-92-o71 1: 1926125-1926182 [+] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UAAACAAAUUCAAGUCUUGGUAAUUGGAAUCGGUCAAUACCAGAUGCAAAUCAAGUUCAAUGUUGCAUUGCACUGUUAUUGAUCUAGUUCCCAUUCAUCAAAUGUUCAACACACCAAU
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Structure
        10         20         30         40        50        
UAAACAAAUUCAAGUCU-    -   U     C-|       C   A     AU  AGUU 
                  UGGU AAU GGAAU  GGUCAAUA CAG UGCAA  CA    C
                  ACUA UUA CCUUG  CUAGUUAU GUC ACGUU  GU    A
UAACCACACAACUUGUAA    C   C     AU^       U   -     AC  UGUA 
      110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-92-o71_5p*
mirBase accessionMIMAT0016565
Sequence 
0- CGGUCAAUACCAGAUGCAAAUCA -23
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Mature sequence

Cin-Mir-92-o71_3p
mirBase accessionMIMAT0016566
Sequence 
35- CAUUGCACUGUUAUUGAUCUAGU -58
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