Mir-493

MirGeneDB ID

Bta-Mir-493

Family name

MIR-493 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-493

Paralogues

Orthologues

Cfa-Mir-493 Cja-Mir-493 Cpo-Mir-493 Dno-Mir-493 Eca-Mir-493 Ete-Mir-493 Hsa-Mir-493 Laf-Mir-493 Mml-Mir-493 Mmr-Mir-493 Mmu-Mir-493 Ocu-Mir-493 Pab-Mir-493 Rno-Mir-493

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037348.1: 65766695-65766757 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-493)

Mir-493 NC_037348.1: 65766695-65766757 [+] UCSC Ensembl
Mir-431 NC_037348.1: 65778736-65778799 [+] UCSC Ensembl
Mir-433 NC_037348.1: 65779607-65779680 [+] UCSC Ensembl
Mir-127 NC_037348.1: 65780711-65780766 [+] UCSC Ensembl
Mir-432 NC_037348.1: 65782197-65782265 [+] UCSC Ensembl
Mir-136-v1 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-136-v2 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-370 NC_037348.1: 65808196-65808252 [+] UCSC Ensembl

Seed

UGUACAU

Precursor
(pre-Mir +30nt flank)

GCUUCGGGGCUCCCUCUGGCCCCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGCAGCAAGUAAAUGGACAU

Get precursor sequence

Structure

        10            20        30        40        50        60 
GCUUCGGGGCUCCCUCU----|  CCC        U                    CAUUCGUU 
                     GGC   CAGGGCCU GUACAUGGUAGGCUUUCAUU        \
                     CCG   GUCCCGGA CGUGUGUCAUCUGGAAGUGG        U
UACAGGUAAAUGAACGACGGA^  U--        C                    CUUACACG 
 120       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-493_5p

mirBase accession

None

Sequence

0- UUGUACAUGGUAGGCUUUCAUU -22

Get sequence

Star sequence

Bta-Mir-493_3p*

mirBase accession

MIMAT0009333

Sequence

41- UGAAGGUCUACUGUGUGCCAGG -63

Get sequence

Proposed targets

TargetScanVert: bta-miR-493