MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-489

Family name MIR-489 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-489
Paralogues Bta-Mir-489-v1 
Orthologues Cfa-Mir-489  Cja-Mir-489  Dno-Mir-489  Eca-Mir-489  Gja-Mir-489  Laf-Mir-489  Lch-Mir-489  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v3)		 Mir-653 NC_037331.1: 10822218-10822278 [-] UCSC Ensembl
Mir-489-v2 NC_037331.1: 10822878-10822939 [-] UCSC Ensembl
Mir-489-v1 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Mir-489-v3 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Variant

Bta-Mir-489-v3
Seed GUGACAU
Precursor
(pre-Mir +30nt flank)		 
GCGGACUACAGCUGUCAGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUCUACUGGAACGUUUAGGAGUGACAUCACAUAUAUGGCGACUAAACUGCUGCAUAGGACAACAAUUAACAG
Get precursor sequence
Structure
        10          20        30        40           50         
GCGGACUACAGCUGUCA-- UG    C     G             ---|  CA   ACUGGA 
                   G  GCAG UUGGU GUCGUAUGUGUGG   CGC  UCU      \
                   C  CGUC AAUCA CGGUAUAUACACU   GUG  AGG      A
GACAAUUAACAACAGGAUA GU    A     G             ACA^  --   AUUUGC 
.       110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-489-v3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGUAUGUGUGGCGCCAUCUA -23
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Mature sequence

Bta-Mir-489-v3_3p
mirBase accessionMIMAT0009942
Sequence 
37- AGUGACAUCACAUAUAUGGCGAC -60
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Proposed targets TargetScanVert: bta-miR-489
Variant

Bta-Mir-489-v1
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
GCGGACUACAGCUGUCAGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUCUACUGGAACGUUUAGGAGUGACAUCACAUAUAUGGCGACUAAACUGCUGCAUAGGACAACAAUUAACAG
Get precursor sequence
Structure
        10          20        30        40           50         
GCGGACUACAGCUGUCA-- UG    C     G             ---|  CA   ACUGGA 
                   G  GCAG UUGGU GUCGUAUGUGUGG   CGC  UCU      \
                   C  CGUC AAUCA CGGUAUAUACACU   GUG  AGG      A
GACAAUUAACAACAGGAUA GU    A     G             ACA^  --   AUUUGC 
.       110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-489-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGUAUGUGUGGCGCCAUCU -22
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Mature sequence

Bta-Mir-489-v1_3p
mirBase accessionMIMAT0009942
Sequence 
38- GUGACAUCACAUAUAUGGCGAC -60
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Proposed targets TargetScanVert: bta-miR-489
Variant

Bta-Mir-489-v2
Seed GACAUCA
Precursor
(pre-Mir +30nt flank)		 
GGCGGACUACAGCUGUCAGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUCUACUGGAACGUUUAGGAGUGACAUCACAUAUAUGGCGACUAAACUGCUGCAUAGGACAACAAUUAACAGG
Get precursor sequence
Structure
        10          20        30        40           50          
GGCGGACUACAGCUGUCA-- UG    C     G             ---|  CA  UACUGGA 
                    G  GCAG UUGGU GUCGUAUGUGUGG   CGC  UC       \
                    C  CGUC AAUCA CGGUAUAUACACU   GUG  AG       A
GGACAAUUAACAACAGGAUA GU    A     G             ACA^  --  GAUUUGC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-489-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUCGUAUGUGUGGCGCCAUC -22
Get sequence
Mature sequence

Bta-Mir-489-v2_3p
mirBase accessionMIMAT0009942
Sequence 
40- UGACAUCACAUAUAUGGCGACU -62
Get sequence
Proposed targets TargetScanVert: bta-miR-489