MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-144

Family name MIR-144 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-144
Paralogues Bta-Mir-144-v1 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Laf-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037346.1: 20238701-20238758 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 NC_037346.1: 20238539-20238580 [-] UCSC Ensembl
Mir-144-v1 NC_037346.1: 20238701-20238758 [-] UCSC Ensembl
Mir-144-v2 NC_037346.1: 20238701-20238758 [-] UCSC Ensembl
Variant

Bta-Mir-144-v2
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
CUCCCUGCGCCUCCCGCAGGGCCCUGACUGGGAUAUCAUCAUAUACUGUAAGUUUGCAACGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUGCUCCCAGCUCUGGAGCCAGCG
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Structure
        10          20        30        40        50         
CUCCCUGCGCCUCCCGC--| G    U      G        A         A  UUGCA 
                   AG GCCC GACUGG AUAUCAUC UAUACUGUA GU     A
                   UC UGGG CUGAUC UGUAGUAG AUAUGACAU CA     C
GCGACCGAGGUCUCGACCC^ G    C      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-144-v2_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Bta-Mir-144-v2_3p*
mirBase accessionMIMAT0009234
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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Proposed targets TargetScanVert: bta-miR-144
Variant

Bta-Mir-144-v1
Seed ACAGUAU
Precursor
(pre-Mir +30nt flank)		 
CUCCCUGCGCCUCCCGCAGGGCCCUGACUGGGAUAUCAUCAUAUACUGUAAGUUUGCAACGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUGCUCCCAGCUCUGGAGCCAGCG
Get precursor sequence
Structure
        10          20        30        40        50         
CUCCCUGCGCCUCCCGC--| G    U      G        A         AGUUUGCA 
                   AG GCCC GACUGG AUAUCAUC UAUACUGUA        \
                   UC UGGG CUGAUC UGUAGUAG AUAUGACAU        A
GCGACCGAGGUCUCGACCC^ G    C      A        -         CACAGAGC 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-144-v1_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
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Mature sequence

Bta-Mir-144-v1_3p
mirBase accessionMIMAT0009234
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
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Proposed targets TargetScanVert: bta-miR-144