MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-458

Family name MIR-458 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-458  Ami-Mir-458  Cli-Mir-458  Cli-Mir-458-as  Cpi-Mir-458  Dre-Mir-458  Gga-Mir-458  Gga-Mir-458-as  Gja-Mir-458  Gmo-Mir-458  Lch-Mir-458  Loc-Mir-458  Mal-Mir-458  Mun-Mir-458  Oan-Mir-458  Pbv-Mir-458  Spt-Mir-458  Tgu-Mir-458  Tni-Mir-458  Xla-Mir-458-P1  Xla-Mir-458-P2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(xenTro9_add)		 chr3: 34925495-34925552 [+] UCSC Ensembl
Seed UAGCUCU
Precursor
(pre-Mir +30nt flank)		 
AGUUCCCACUCACUUUAUGGUGCAGAUGGCAGCGCCAUUUUCCGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUACCAUAUGUGCUGAAAAAUCAGCGAGUGGAGC
Get precursor sequence
Structure
        10          20        30        40        50        
AGUUCCCACUCACUUUAU--| UG  G    C  CG      UCC       AAACAGU 
                    GG  CA AUGG AG  CCAUUU   GAGCUAU       A
                    UC  GU UACC UC  GGUAAG   CUCGAUA       U
CGAGGUGAGCGACUAAAAAG^ GU  A    A  AU      UUU       CUGUUAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-458_5p*
mirBase accessionNone
Sequence 
0- AGCGCCAUUUUCCGAGCUAUAA -22
Get sequence
Mature sequence

Xtr-Mir-458_3p
mirBase accessionNone
Sequence 
36- AUAGCUCUUUGAAUGGUACUAC -58
Get sequence