MirGeneDB ID | Xtr-Mir-458 |
Family name |
MIR-458 (all species) |
Seed |
UAGCUCU |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-458
Ami-Mir-458
Cli-Mir-458
Cli-Mir-458-as
Cpi-Mir-458
Dre-Mir-458
Gga-Mir-458
Gga-Mir-458-as
Gja-Mir-458
Gmo-Mir-458
Lch-Mir-458
Loc-Mir-458
Mal-Mir-458
Mun-Mir-458
Oan-Mir-458
Pbv-Mir-458
Spt-Mir-458
Tgu-Mir-458
Tni-Mir-458
Xla-Mir-458-P1
Xla-Mir-458-P2
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (xenTro9_add) |
chr3: 34925495-34925552 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUCCCACUCACUUUAUGGUGCAGAUGGCAGCGCCAUUUUCCGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUACCAUAUGUGCUGAAAAAUCAGCGAGUGGAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUUCCCACUCACUUUAU--| UG G C CG UCC AAACAGU
GG CA AUGG AG CCAUUU GAGCUAU A
UC GU UACC UC GGUAAG CUCGAUA U
CGAGGUGAGCGACUAAAAAG^ GU A A AU UUU CUGUUAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xtr-Mir-458_5p* |
mirBase accession | None |
Sequence |
0- AGCGCCAUUUUCCGAGCUAUAA -22
Get sequence
|
Mature sequence |
Xtr-Mir-458_3p |
mirBase accession | None |
Sequence |
36- AUAGCUCUUUGAAUGGUACUAC -58
Get sequence
|