MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-458

Family name MIR-458 (all species)
Seed UAGCUCU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-458  Ami-Mir-458  Cli-Mir-458  Cli-Mir-458-as  Cpi-Mir-458  Dre-Mir-458  Gga-Mir-458  Gga-Mir-458-as  Gja-Mir-458  Gmo-Mir-458  Loc-Mir-458  Mal-Mir-458  Mun-Mir-458  Oan-Mir-458  Pbv-Mir-458  Spt-Mir-458  Tgu-Mir-458  Tni-Mir-458  Xla-Mir-458-P1  Xla-Mir-458-P2  Xtr-Mir-458 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LatCha1_add)
JH126722.1: 216349-216406 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCAUGUUUGCAUCCGAGGUGCAGAUGGCAGUGCCAUUUGCAAAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUGCCAUAUGUACUAAACAAUCAGCACACUCAAU
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Structure
        10          20        30        40        50        
CUGCAUGUUUGCAUCCGA--|     G                CAA      AAACAGU 
                    GGUGCA AUGGCAGUGCCAUUUG   AGCUAU       A
                    UCAUGU UACCGUCAUGGUAAGU   UCGAUA       U
UAACUCACACGACUAACAAA^     A                UUC      CUGUUAC 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-458_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUGCCAUUUGCAAAGCUAUAA -22
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Mature sequence

Lch-Mir-458_3p (predicted)

mirBase accessionNone
Sequence
36- AUAGCUCUUUGAAUGGUACUGC -58
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