| MirGeneDB ID | Spt-Mir-458 |
|---|---|
| Family name | MIR-458 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-458 Ami-Mir-458 Cli-Mir-458 Cli-Mir-458-as Cpi-Mir-458 Dre-Mir-458 Gga-Mir-458 Gga-Mir-458-as Gja-Mir-458 Gmo-Mir-458 Lch-Mir-458 Loc-Mir-458 Mal-Mir-458 Mun-Mir-458 Oan-Mir-458 Pbv-Mir-458 Tgu-Mir-458 Tni-Mir-458 Xla-Mir-458-P1 Xla-Mir-458-P2 Xtr-Mir-458 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01015368.1: 1559631-1559688 [+] UCSC Ensembl |
| Seed | UAGCUCU |
| Precursor (pre-Mir +30nt flank) |
AGGUCCUGCUGCACGGAUGGUGCAGAUGGCAGCGACAUUUUCAGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUGCCAUAUGUACUGAAAAAUCAGCAUUUGUGCUGet precursor sequence |
| Structure | 10 20 30 40 50 AGGUCCUGCUGCACGGAU--| G CGA UC AAACAGU GGUGCA AUGGCAG CAUUU AGAGCUAU A UCAUGU UACCGUC GUAAG UCUCGAUA U UCGUGUUUACGACUAAAAAG^ A AUG UU CUGUUAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-458_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGCGACAUUUUCAGAGCUAUAA -22
Get sequence
|
| Mature sequence | Spt-Mir-458_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- AUAGCUCUUUGAAUGGUACUGC -58
Get sequence
|
