MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-458

Family name MIR-458 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-458  Ami-Mir-458  Cli-Mir-458  Cli-Mir-458-as  Cpi-Mir-458  Dre-Mir-458  Gga-Mir-458  Gga-Mir-458-as  Gmo-Mir-458  Lch-Mir-458  Loc-Mir-458  Mal-Mir-458  Mun-Mir-458  Oan-Mir-458  Pbv-Mir-458  Spt-Mir-458  Tgu-Mir-458  Tni-Mir-458  Xla-Mir-458-P1  Xla-Mir-458-P2  Xtr-Mir-458 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015177083.1: 13651-13708 [+]
Seed UAGCUCU
Precursor
(pre-Mir +30nt flank)		 
GCCUUCUUGGUGAAUCAUGGUGCAGAUGGCAGCGCCAUUUUCAGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUGCCAUAUGUACUGGUAAAACAGCUUUAGAUGU
Get precursor sequence
Structure
        10          20        30        40        50        
GCCUUCUUGGUGAAUCAU--|     G       CG      UC        AAACAGU 
                    GGUGCA AUGGCAG  CCAUUU  AGAGCUAU       A
                    UCAUGU UACCGUC  GGUAAG  UCUCGAUA       U
UGUAGAUUUCGACAAAAUGG^     A       AU      UU        CUGUUAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-458_5p*
mirBase accessionNone
Sequence 
0- AGCGCCAUUUUCAGAGCUAUAA -22
Get sequence
Mature sequence

Gja-Mir-458_3p
mirBase accessionNone
Sequence 
36- AUAGCUCUUUGAAUGGUACUGC -58
Get sequence