Mir-129-P1a

MirGeneDB ID

Tni-Mir-129-P1a

Family name

MIR-129 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-129-1

Paralogues

Tni-Mir-129-P1b Tni-Mir-129-P2a Tni-Mir-129-P2b

Orthologues

Ami-Mir-129-P1 Bta-Mir-129-P1 Cfa-Mir-129-P1 Cja-Mir-129-P1 Cpi-Mir-129-P1 Cpo-Mir-129-P1 Dno-Mir-129-P1 Dre-Mir-129-P1a Eca-Mir-129-P1 Ete-Mir-129-P1 Gga-Mir-129-P1 Gja-Mir-129-P1 Gmo-Mir-129-P1a Hsa-Mir-129-P1 Laf-Mir-129-P1 Lch-Mir-129-P1 Loc-Mir-129-P1 Mal-Mir-129-P1a Mml-Mir-129-P1 Mmr-Mir-129-P1 Mmu-Mir-129-P1 Mun-Mir-129-P1 Neu-Mir-129-P1 Oan-Mir-129-P1 Ocu-Mir-129-P1 Pab-Mir-129-P1 Pbv-Mir-129-P1 Pma-Mir-129-o1 Rno-Mir-129-P1 Sha-Mir-129-P1 Spt-Mir-129-P1 Tgu-Mir-129-P1 Xtr-Mir-129-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Chordata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

13: 12882721-12882781 [+] UCSC Ensembl

Seed

AGCCCUU

Precursor
(pre-Mir +30nt flank)

GCUGACUCCACCAGGAUGUCCUUCACGAAUCUUUUUGCGGUCUGGGCUUGCUGUUCUCUGCUCACCCGGAAGCCCUUACCCCAAAAAGCAUUUGCGGGGGGCGCGAUCAGCGCACGUCCAG

Get precursor sequence

Structure

        10          20        30         40        50         
GCUGACUCCACCAGGAU--       A     -|      C   CU      GCUGUUCUC 
                   GUCCUUC CGAAU CUUUUUG GGU  GGGCUU         U
                   CGGGGGG GUUUA GAAAAAC CCA  CCCGAA         G
GACCUGCACGCGACUAGCG       C     C^      C   UU      GGCCCACUC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-129-P1a_5p*

mirBase accession

MIMAT0003036

Sequence

0- CUUUUUGCGGUCUGGGCUUGC -21

Get sequence

Mature sequence

Tni-Mir-129-P1a_3p

mirBase accession

None

Sequence

39- AAGCCCUUACCCCAAAAAGCAU -61

Get sequence