| MirGeneDB ID | Tni-Mir-129-P1b |
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| Family name |
MIR-129 (all species) |
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| Seed |
AGCCCUU |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
Tni-Mir-129-P1a
Tni-Mir-129-P2a
Tni-Mir-129-P2b
|
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| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Dre-Mir-129-P1b
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Gmo-Mir-129-P1b
Hsa-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mal-Mir-129-P1b
Mml-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Xtr-Mir-129-P1
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
5: 11469568-11469630 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGGGGCAGCUGGAAGUUGUCCGUCACGAAUCUUUUUGCGGUCUGGGCUUGCUGUGUAUACACGAGUGCGGGAAGCCCUUACCCCAAAAAGCAUUUGUGGAGGAUGUGAGCGUCGAUCCUGCUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGGGGCAGCUGGAAGUU-- GU -| C CU G UGUGUAUA
GUCC CACGAAU CUUUUUG GGU GGGCUU C C
UAGG GUGUUUA GAAAAAC CCA CCCGAA G A
UUCGUCCUAGCUGCGAGUG AG C^ C UU G GCGUGAGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Tni-Mir-129-P1b_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
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| Mature sequence |
Tni-Mir-129-P1b_3p |
| mirBase accession | None |
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| Sequence |
41- AAGCCCUUACCCCAAAAAGCAU -63
Get sequence
|
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