MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-129-P1

Family name MIR-129 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-129b
Paralogues Ami-Mir-129-P2  Ami-Mir-129-P4 
Orthologues Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713697.1: 10867520-10867584 [-] UCSC
Seed UUUUUGC
Precursor
(pre-Mir +30nt flank)		 
AAGCCGCAGGAGACUUUGUCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUACCUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUCGCGGAGGGCGCAUUCGCCGAAGGAGCAG
Get precursor sequence
Structure
        10          20        30         40        50        60 
AAGCCGCAGGAGACUUU--             -|      C   CU      G UGUACAUAA 
                   GUCCUUCGCGAAU CUUUUUG GGU  GGGCUU C         C
                   CGGGAGGCGCUUA GAAAAAC CCA  CCCGAA G         U
GACGAGGAAGCCGCUUACG             C^      C   UU      G GCCGAUCCA 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Ami-Mir-129-P1_5p
mirBase accessionMIMAT0038138
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Co-mature sequence

Ami-Mir-129-P1_3p
mirBase accessionMIMAT0038139
Sequence 
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence