| MirGeneDB ID | Xla-Mir-129-P1d |
|---|
| Family name |
MIR-129 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-129-P1c
Xla-Mir-129-P2c
Xla-Mir-129-P2d
Xla-Mir-129-P4
|
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| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cja-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Eca-Mir-129-P1
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Hsa-Mir-129-P1
Laf-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mml-Mir-129-P1
Mmr-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Neu-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pab-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Xtr-Mir-129-P1
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030731.1: 16187756-16187820 [-]
UCSC
Ensembl
|
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| Seed |
AGCCCUU |
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Precursor
(pre-Mir +30nt flank) |
UGGGGAGCUGGAUUUUAGUCCUUCUCAAAUCUUUUUGCGGUCUGGGCUUGCUGUAUAUAAAUACCUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGACGCAGUCGGCGGCGACAACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGGGGAGCUGGAUUUUA-- U -| C CU G UGUAUAUAA
GUCCUUC CAAAU CUUUUUG GGU GGGCUU C A
CAGGAGG GUUUA GAAAAAC CCA CCCGAA G U
GCAACAGCGGCGGCUGACG C C^ C UU G GCCGAUCCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-129-P1d_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-129-P1d_3p |
| mirBase accession | None |
|---|
| Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|
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