| MirGeneDB ID | Xla-Mir-129-P4 |
|---|
| Family name |
MIR-129 (all species) |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-129-P1c
Xla-Mir-129-P1d
Xla-Mir-129-P2c
Xla-Mir-129-P2d
|
|---|
| Orthologues |
Aca-Mir-129-P4
Ami-Mir-129-P4
Cmi-Mir-129-P4
Gja-Mir-129-P4
Lch-Mir-129-P4
Mun-Mir-129-P4
Pbv-Mir-129-P4
Spt-Mir-129-P4
Sto-Mir-129-P4
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694863.1: 171079-171145 [+]
UCSC
Ensembl
|
|---|
| Seed |
AGCCCUU |
|---|
Precursor
(pre-Mir +30nt flank) |
ACAGAACCCAGAGUCAGGUCUGUCACAGAUCUUUUUGUUGUCUGGGCUUUCUGGGUCUAUCACCCCCAUAUCAGAAAGCCCUUACCCCAAAAAGCAUUUGAGCUCAGACAAUUACAUCGGUGGAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACAGAACCCAGAGUCAG- UCA- -| UU CU UGGGUCUAUC
GUCUG CAGAU CUUUUUG GU GGGCUUUC A
CAGAC GUUUA GAAAAAC CA CCCGAAAG C
AAAAGGUGGCUACAUUAA UCGA C^ CC UU ACUAUACCCC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Mir-129-P4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUUUGUUGUCUGGGCUUUC -21
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-129-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
45- AAGCCCUUACCCCAAAAAGCAU -67
Get sequence
|
|---|
